Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13242 | 3' | -61.5 | NC_003401.1 | + | 32321 | 0.67 | 0.585372 |
Target: 5'- gCCCGccuaaaagggcgguGGUGCCg-GGCgGuGGCGCGCGu -3' miRNA: 3'- -GGGU--------------UCGCGGaaCCGgU-CCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 30511 | 0.66 | 0.617911 |
Target: 5'- cCCCAccGGCGCCUcaaccUGGCCucGCuccuGgGUGGg -3' miRNA: 3'- -GGGU--UCGCGGA-----ACCGGucCG----CgCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 30343 | 0.66 | 0.647592 |
Target: 5'- aCCCAGGaGCga-GGCCAGGUugagGCGCcGGu -3' miRNA: 3'- -GGGUUCgCGgaaCCGGUCCG----CGCG-CC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23994 | 0.67 | 0.611979 |
Target: 5'- aCCCAAcGCGCCcaUUGGCUGccgccagcguccaauGGCcGCGCcGGu -3' miRNA: 3'- -GGGUU-CGCGG--AACCGGU---------------CCG-CGCG-CC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23691 | 0.68 | 0.53967 |
Target: 5'- gCC-AGCGCCaccaccGGCCuccucugcGGCGCGCGu -3' miRNA: 3'- gGGuUCGCGGaa----CCGGu-------CCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23496 | 0.66 | 0.6377 |
Target: 5'- aCCCuucGGUGaCCUcgggGaGCCGGGUGCaggGCGGg -3' miRNA: 3'- -GGGu--UCGC-GGAa---C-CGGUCCGCG---CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 21792 | 0.66 | 0.647592 |
Target: 5'- aCCCGaaGGUGCCgcGGCCGuccgcuGCGCGUGc -3' miRNA: 3'- -GGGU--UCGCGGaaCCGGUc-----CGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 21605 | 0.66 | 0.6377 |
Target: 5'- aCCAaaagGGUGUUUUGGagGGGCGuCGUGGa -3' miRNA: 3'- gGGU----UCGCGGAACCggUCCGC-GCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 18791 | 0.7 | 0.438469 |
Target: 5'- aCCCAcuGGacauaguaccCGCCgUGGUCGaGCGCGCGGa -3' miRNA: 3'- -GGGU--UC----------GCGGaACCGGUcCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 15786 | 0.66 | 0.667334 |
Target: 5'- gCCCGAGgGaCaggggGGCUaucaGGGCGCGaCGGu -3' miRNA: 3'- -GGGUUCgC-Ggaa--CCGG----UCCGCGC-GCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 15670 | 0.73 | 0.299239 |
Target: 5'- gCCAAGCugGCCaagauucaGGCCAGGCGCGUc- -3' miRNA: 3'- gGGUUCG--CGGaa------CCGGUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 15033 | 0.72 | 0.341555 |
Target: 5'- gCCAGGCGg---GGCguGGCGCGCGc -3' miRNA: 3'- gGGUUCGCggaaCCGguCCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14220 | 0.71 | 0.36428 |
Target: 5'- gCCCGggggcgcuagagGGUGUCggggaccGGCCGGGUGCGCGa -3' miRNA: 3'- -GGGU------------UCGCGGaa-----CCGGUCCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14168 | 0.66 | 0.617911 |
Target: 5'- gCCGcGCGgCUcUGGCgggcggcaaguaCAGGCGUGUGGg -3' miRNA: 3'- gGGUuCGCgGA-ACCG------------GUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14068 | 0.69 | 0.474103 |
Target: 5'- aCCCucuAGCGCCc---CCGGGCGUccGCGGu -3' miRNA: 3'- -GGGu--UCGCGGaaccGGUCCGCG--CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 13669 | 0.7 | 0.412774 |
Target: 5'- -aCAGGuCGCg--GGCCAGGCGguCGCGGu -3' miRNA: 3'- ggGUUC-GCGgaaCCGGUCCGC--GCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 9361 | 0.66 | 0.647592 |
Target: 5'- cCCCuAGCGCCggcgcccuacUGGCCGGGaagaaGCGa -3' miRNA: 3'- -GGGuUCGCGGa---------ACCGGUCCgcg--CGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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