miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13242 3' -61.5 NC_003401.1 + 63945 0.67 0.608028
Target:  5'- aCCAAaCGCggucagUGGCgCGGGCGCGCu- -3'
miRNA:   3'- gGGUUcGCGga----ACCG-GUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 117937 0.68 0.511131
Target:  5'- gCCCAaaucuGGgGCCcaUGGU--GGCGCGCGGc -3'
miRNA:   3'- -GGGU-----UCgCGGa-ACCGguCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 128358 0.68 0.511131
Target:  5'- gCCAAGUGUCagggcGGCCaAGGUGCcCGGg -3'
miRNA:   3'- gGGUUCGCGGaa---CCGG-UCCGCGcGCC- -5'
13242 3' -61.5 NC_003401.1 + 132449 0.67 0.568729
Target:  5'- cCCCGGGUGCCgcuccGCCGGGC-C-CGGc -3'
miRNA:   3'- -GGGUUCGCGGaac--CGGUCCGcGcGCC- -5'
13242 3' -61.5 NC_003401.1 + 123358 0.67 0.578506
Target:  5'- -aUAGGCGgUUUGGCCGcGGCGCGgccccUGGa -3'
miRNA:   3'- ggGUUCGCgGAACCGGU-CCGCGC-----GCC- -5'
13242 3' -61.5 NC_003401.1 + 74944 0.67 0.578506
Target:  5'- gCCAAGCGC-----CCAGGCG-GCGGg -3'
miRNA:   3'- gGGUUCGCGgaaccGGUCCGCgCGCC- -5'
13242 3' -61.5 NC_003401.1 + 32321 0.67 0.585372
Target:  5'- gCCCGccuaaaagggcgguGGUGCCg-GGCgGuGGCGCGCGu -3'
miRNA:   3'- -GGGU--------------UCGCGGaaCCGgU-CCGCGCGCc -5'
13242 3' -61.5 NC_003401.1 + 79033 0.67 0.588319
Target:  5'- --gAAGUGCCacaugaaaccgUGGCCGGGUGCGUa- -3'
miRNA:   3'- gggUUCGCGGa----------ACCGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 132395 0.67 0.588319
Target:  5'- gCCGGGcCGCUUUcgguucgcggGGCCGGGgGUcccGCGGg -3'
miRNA:   3'- gGGUUC-GCGGAA----------CCGGUCCgCG---CGCC- -5'
13242 3' -61.5 NC_003401.1 + 14068 0.69 0.474103
Target:  5'- aCCCucuAGCGCCc---CCGGGCGUccGCGGu -3'
miRNA:   3'- -GGGu--UCGCGGaaccGGUCCGCG--CGCC- -5'
13242 3' -61.5 NC_003401.1 + 18791 0.7 0.438469
Target:  5'- aCCCAcuGGacauaguaccCGCCgUGGUCGaGCGCGCGGa -3'
miRNA:   3'- -GGGU--UC----------GCGGaACCGGUcCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 107628 0.7 0.412774
Target:  5'- uCCCGGGUccGCCgccaCCGGGCGCGgGGc -3'
miRNA:   3'- -GGGUUCG--CGGaaccGGUCCGCGCgCC- -5'
13242 3' -61.5 NC_003401.1 + 132677 0.81 0.081907
Target:  5'- cCCgGGGCGCCUcGGCgGGGCccgGCGCGGg -3'
miRNA:   3'- -GGgUUCGCGGAaCCGgUCCG---CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 49704 0.8 0.09242
Target:  5'- aCCCucGUGCCccugccuuaucucgUgcggGGCCAGGCGCGCGGc -3'
miRNA:   3'- -GGGuuCGCGG--------------Aa---CCGGUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132223 0.76 0.183001
Target:  5'- gCCCGgccGGCGCCgccGCCGGGC-CGCGGc -3'
miRNA:   3'- -GGGU---UCGCGGaacCGGUCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132533 0.75 0.21651
Target:  5'- cCCCGGGC-CCggGGCCccacaagccgcGGCGCGCGGc -3'
miRNA:   3'- -GGGUUCGcGGaaCCGGu----------CCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 15670 0.73 0.299239
Target:  5'- gCCAAGCugGCCaagauucaGGCCAGGCGCGUc- -3'
miRNA:   3'- gGGUUCG--CGGaa------CCGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 80161 0.71 0.349015
Target:  5'- aCCCAAuaggcGCGCCUUGGCCuGGCccaGCc- -3'
miRNA:   3'- -GGGUU-----CGCGGAACCGGuCCGcg-CGcc -5'
13242 3' -61.5 NC_003401.1 + 132280 0.71 0.36428
Target:  5'- cCCCGcGCGCCccccgGGCCc-GCGCGcCGGg -3'
miRNA:   3'- -GGGUuCGCGGaa---CCGGucCGCGC-GCC- -5'
13242 3' -61.5 NC_003401.1 + 117857 0.71 0.372084
Target:  5'- aCCCcGGCGCCaaagagcGGCCgauGGGUacGCGCGGc -3'
miRNA:   3'- -GGGuUCGCGGaa-----CCGG---UCCG--CGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.