Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13242 | 3' | -61.5 | NC_003401.1 | + | 80161 | 0.71 | 0.349015 |
Target: 5'- aCCCAAuaggcGCGCCUUGGCCuGGCccaGCc- -3' miRNA: 3'- -GGGUU-----CGCGGAACCGGuCCGcg-CGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132280 | 0.71 | 0.36428 |
Target: 5'- cCCCGcGCGCCccccgGGCCc-GCGCGcCGGg -3' miRNA: 3'- -GGGUuCGCGGaa---CCGGucCGCGC-GCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 117857 | 0.71 | 0.372084 |
Target: 5'- aCCCcGGCGCCaaagagcGGCCgauGGGUacGCGCGGc -3' miRNA: 3'- -GGGuUCGCGGaa-----CCGG---UCCG--CGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 107628 | 0.7 | 0.412774 |
Target: 5'- uCCCGGGUccGCCgccaCCGGGCGCGgGGc -3' miRNA: 3'- -GGGUUCG--CGGaaccGGUCCGCGCgCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 18791 | 0.7 | 0.438469 |
Target: 5'- aCCCAcuGGacauaguaccCGCCgUGGUCGaGCGCGCGGa -3' miRNA: 3'- -GGGU--UC----------GCGGaACCGGUcCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 116525 | 0.7 | 0.438469 |
Target: 5'- gCCAGGaGCCUUGG-CAGGCagucgcaccucuGUGCGGc -3' miRNA: 3'- gGGUUCgCGGAACCgGUCCG------------CGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 104836 | 0.69 | 0.456099 |
Target: 5'- aCCGAGU-CCaucGCCGGGCGCGcCGGa -3' miRNA: 3'- gGGUUCGcGGaacCGGUCCGCGC-GCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 45052 | 0.69 | 0.474103 |
Target: 5'- gCCAGGcCGCCUUuaacagGGCCAGcccauaguguGCGCGCu- -3' miRNA: 3'- gGGUUC-GCGGAA------CCGGUC----------CGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 119273 | 0.69 | 0.474103 |
Target: 5'- cUCCAGGCGCgacgUGGCCAaGGU-CGUGGc -3' miRNA: 3'- -GGGUUCGCGga--ACCGGU-CCGcGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 121193 | 0.69 | 0.483238 |
Target: 5'- aCCCAGGaucgaccccCCUcGGCCGGGCcCGUGGu -3' miRNA: 3'- -GGGUUCgc-------GGAaCCGGUCCGcGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 94143 | 0.68 | 0.501756 |
Target: 5'- gCCCAauuaAGCaGUUggagcgGGCC-GGUGCGCGGg -3' miRNA: 3'- -GGGU----UCG-CGGaa----CCGGuCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132559 | 0.7 | 0.42465 |
Target: 5'- cCCCcGGCcCCgcgaaccgaaagcGGCCcGGCGCGCGGc -3' miRNA: 3'- -GGGuUCGcGGaa-----------CCGGuCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 13669 | 0.7 | 0.412774 |
Target: 5'- -aCAGGuCGCg--GGCCAGGCGguCGCGGu -3' miRNA: 3'- ggGUUC-GCGgaaCCGGUCCGC--GCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14220 | 0.71 | 0.36428 |
Target: 5'- gCCCGggggcgcuagagGGUGUCggggaccGGCCGGGUGCGCGa -3' miRNA: 3'- -GGGU------------UCGCGGaa-----CCGGUCCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132824 | 0.71 | 0.359652 |
Target: 5'- gCCgAGGCGCCccgGGCCccggccccccucccGGCGgCGCGGa -3' miRNA: 3'- -GGgUUCGCGGaa-CCGGu-------------CCGC-GCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 15033 | 0.72 | 0.341555 |
Target: 5'- gCCAGGCGg---GGCguGGCGCGCGc -3' miRNA: 3'- gGGUUCGCggaaCCGguCCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 87979 | 0.74 | 0.255137 |
Target: 5'- -aCGAGUGUCUgUGG-CGGGCGUGCGGg -3' miRNA: 3'- ggGUUCGCGGA-ACCgGUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 105991 | 0.74 | 0.232414 |
Target: 5'- gCCGcGCGCCU-GGCCaAGGCGCuuGGg -3' miRNA: 3'- gGGUuCGCGGAaCCGG-UCCGCGcgCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132379 | 0.75 | 0.196762 |
Target: 5'- gCCCGgcggcGGCGCC--GGCCGGGCGCcucCGGg -3' miRNA: 3'- -GGGU-----UCGCGGaaCCGGUCCGCGc--GCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 38369 | 0.66 | 0.657473 |
Target: 5'- aCCGAGUuUCUggGGCCAGGCGaaacgccuCGCGu -3' miRNA: 3'- gGGUUCGcGGAa-CCGGUCCGC--------GCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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