Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13242 | 3' | -61.5 | NC_003401.1 | + | 30511 | 0.66 | 0.617911 |
Target: 5'- cCCCAccGGCGCCUcaaccUGGCCucGCuccuGgGUGGg -3' miRNA: 3'- -GGGU--UCGCGGA-----ACCGGucCG----CgCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23691 | 0.68 | 0.53967 |
Target: 5'- gCC-AGCGCCaccaccGGCCuccucugcGGCGCGCGu -3' miRNA: 3'- gGGuUCGCGGaa----CCGGu-------CCGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 80330 | 0.68 | 0.549305 |
Target: 5'- gUCUAGGCuggGCCa-GGCCaAGGCGCGCc- -3' miRNA: 3'- -GGGUUCG---CGGaaCCGG-UCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14168 | 0.66 | 0.617911 |
Target: 5'- gCCGcGCGgCUcUGGCgggcggcaaguaCAGGCGUGUGGg -3' miRNA: 3'- gGGUuCGCgGA-ACCG------------GUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 21792 | 0.66 | 0.647592 |
Target: 5'- aCCCGaaGGUGCCgcGGCCGuccgcuGCGCGUGc -3' miRNA: 3'- -GGGU--UCGCGGaaCCGGUc-----CGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 133711 | 0.67 | 0.578506 |
Target: 5'- gCCGGGUGCCcggcGGuCCGGGCG-GgGGa -3' miRNA: 3'- gGGUUCGCGGaa--CC-GGUCCGCgCgCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 112097 | 0.67 | 0.608028 |
Target: 5'- gCCCGuccGGuCGCCUgacGCUAGGUGCGUa- -3' miRNA: 3'- -GGGU---UC-GCGGAac-CGGUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23496 | 0.66 | 0.6377 |
Target: 5'- aCCCuucGGUGaCCUcgggGaGCCGGGUGCaggGCGGg -3' miRNA: 3'- -GGGu--UCGC-GGAa---C-CGGUCCGCG---CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132679 | 0.68 | 0.520578 |
Target: 5'- cCCCGGGC-CCggggGGCguCGGG-GCGCGGc -3' miRNA: 3'- -GGGUUCGcGGaa--CCG--GUCCgCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23994 | 0.67 | 0.611979 |
Target: 5'- aCCCAAcGCGCCcaUUGGCUGccgccagcguccaauGGCcGCGCcGGu -3' miRNA: 3'- -GGGUU-CGCGG--AACCGGU---------------CCG-CGCG-CC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132631 | 0.67 | 0.588319 |
Target: 5'- aCCgGGGCGCUcccgggagucGGCCGGGCcCgGCGGa -3' miRNA: 3'- -GGgUUCGCGGaa--------CCGGUCCGcG-CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 118101 | 0.67 | 0.578506 |
Target: 5'- gCCGcGCGCCaccaugGGCCccagauuuGGGC-CGCGGg -3' miRNA: 3'- gGGUuCGCGGaa----CCGG--------UCCGcGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14068 | 0.69 | 0.474103 |
Target: 5'- aCCCucuAGCGCCc---CCGGGCGUccGCGGu -3' miRNA: 3'- -GGGu--UCGCGGaaccGGUCCGCG--CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 49704 | 0.8 | 0.09242 |
Target: 5'- aCCCucGUGCCccugccuuaucucgUgcggGGCCAGGCGCGCGGc -3' miRNA: 3'- -GGGuuCGCGG--------------Aa---CCGGUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 72475 | 0.66 | 0.657473 |
Target: 5'- gCCCGcGCGUCacGGCCuuGGC-CGUGGc -3' miRNA: 3'- -GGGUuCGCGGaaCCGGu-CCGcGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 15786 | 0.66 | 0.667334 |
Target: 5'- gCCCGAGgGaCaggggGGCUaucaGGGCGCGaCGGu -3' miRNA: 3'- -GGGUUCgC-Ggaa--CCGG----UCCGCGC-GCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 80161 | 0.71 | 0.349015 |
Target: 5'- aCCCAAuaggcGCGCCUUGGCCuGGCccaGCc- -3' miRNA: 3'- -GGGUU-----CGCGGAACCGGuCCGcg-CGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132449 | 0.67 | 0.568729 |
Target: 5'- cCCCGGGUGCCgcuccGCCGGGC-C-CGGc -3' miRNA: 3'- -GGGUUCGCGGaac--CGGUCCGcGcGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 128358 | 0.68 | 0.511131 |
Target: 5'- gCCAAGUGUCagggcGGCCaAGGUGCcCGGg -3' miRNA: 3'- gGGUUCGCGGaa---CCGG-UCCGCGcGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 117937 | 0.68 | 0.511131 |
Target: 5'- gCCCAaaucuGGgGCCcaUGGU--GGCGCGCGGc -3' miRNA: 3'- -GGGU-----UCgCGGa-ACCGguCCGCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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