Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13243 | 3' | -57.3 | NC_003401.1 | + | 18004 | 0.66 | 0.78011 |
Target: 5'- gAGAUCCGCGcgucccuguGCGCC-GCGUcauccgaaaacGGCCUCa -3' miRNA: 3'- -UUUGGGCGUu--------UGCGGcCGCA-----------UCGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 105781 | 0.66 | 0.78011 |
Target: 5'- uGGACCCGCGggccaaagGugGUCaGGUGUagGGUCUCg -3' miRNA: 3'- -UUUGGGCGU--------UugCGG-CCGCA--UCGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 128994 | 0.66 | 0.807655 |
Target: 5'- -cACCCGCuugcuuuuGCGCCGGC-UAGaCUUa -3' miRNA: 3'- uuUGGGCGuu------UGCGGCCGcAUCgGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 94495 | 0.66 | 0.798625 |
Target: 5'- -cACUgGCAAACGUgggaCGGCGUuaAGCCg- -3' miRNA: 3'- uuUGGgCGUUUGCG----GCCGCA--UCGGag -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 47809 | 0.66 | 0.816521 |
Target: 5'- uGACCCGCGAcggauCGCCGGUugAGaCCa- -3' miRNA: 3'- uUUGGGCGUUu----GCGGCCGcaUC-GGag -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 7419 | 0.66 | 0.798625 |
Target: 5'- ---aCgGCAAcACGCCGGCaacguGCCUCa -3' miRNA: 3'- uuugGgCGUU-UGCGGCCGcau--CGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 132673 | 0.67 | 0.770643 |
Target: 5'- gGGGCCCG-GGGCGCCucGGCGgGGCC-Cg -3' miRNA: 3'- -UUUGGGCgUUUGCGG--CCGCaUCGGaG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 31533 | 0.67 | 0.770643 |
Target: 5'- aAAACCCGuUAAGCGCCGccgaCGUGGUgUUg -3' miRNA: 3'- -UUUGGGC-GUUUGCGGCc---GCAUCGgAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 14176 | 0.67 | 0.770643 |
Target: 5'- --uCCCGCcccUGCCGGCGccggAGCCg- -3' miRNA: 3'- uuuGGGCGuuuGCGGCCGCa---UCGGag -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 51551 | 0.67 | 0.761048 |
Target: 5'- ----aCGUGAACGCCGGUGggGGUCUUg -3' miRNA: 3'- uuuggGCGUUUGCGGCCGCa-UCGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 117754 | 0.67 | 0.751336 |
Target: 5'- --cCCCGCGccCGuUCGGCGUGaCCUCg -3' miRNA: 3'- uuuGGGCGUuuGC-GGCCGCAUcGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 66702 | 0.67 | 0.751336 |
Target: 5'- cAGGCCCGUAGcUGCCuGGCGgcGCUc- -3' miRNA: 3'- -UUUGGGCGUUuGCGG-CCGCauCGGag -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 129313 | 0.67 | 0.741517 |
Target: 5'- --uCCUGgGGugGUgGGUGUGGUCUCa -3' miRNA: 3'- uuuGGGCgUUugCGgCCGCAUCGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 20191 | 0.67 | 0.721592 |
Target: 5'- gGAGCCCGCGAACcaUGGCGUucauacacucGGCCcCg -3' miRNA: 3'- -UUUGGGCGUUUGcgGCCGCA----------UCGGaG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 122568 | 0.67 | 0.721592 |
Target: 5'- --gUCCGCc-GCGCCGGUG-AGCCg- -3' miRNA: 3'- uuuGGGCGuuUGCGGCCGCaUCGGag -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 74726 | 0.67 | 0.721592 |
Target: 5'- uAAACCCGCAAcACGUCcaaaacgaaccaGGCGcGGCCa- -3' miRNA: 3'- -UUUGGGCGUU-UGCGG------------CCGCaUCGGag -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 107783 | 0.67 | 0.721592 |
Target: 5'- -cGCCCGguGGCGCgGacccgggaGCGUGGCgUCu -3' miRNA: 3'- uuUGGGCguUUGCGgC--------CGCAUCGgAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 118607 | 0.67 | 0.769689 |
Target: 5'- --cCCCGCGAucGCaccuuugGCCGGCc-GGCCUCu -3' miRNA: 3'- uuuGGGCGUU--UG-------CGGCCGcaUCGGAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 17335 | 0.67 | 0.761048 |
Target: 5'- --cCCUGCGGAcucCGCUGGCGcGGCgUCu -3' miRNA: 3'- uuuGGGCGUUU---GCGGCCGCaUCGgAG- -5' |
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13243 | 3' | -57.3 | NC_003401.1 | + | 118262 | 0.67 | 0.751336 |
Target: 5'- -cGCCCGgGGuCGCCGGCG-GGUCa- -3' miRNA: 3'- uuUGGGCgUUuGCGGCCGCaUCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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