miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13243 3' -57.3 NC_003401.1 + 7419 0.66 0.798625
Target:  5'- ---aCgGCAAcACGCCGGCaacguGCCUCa -3'
miRNA:   3'- uuugGgCGUU-UGCGGCCGcau--CGGAG- -5'
13243 3' -57.3 NC_003401.1 + 9358 0.69 0.61872
Target:  5'- cGACCC-CuAGCGCCGGCGcccuacUGGCCg- -3'
miRNA:   3'- uUUGGGcGuUUGCGGCCGC------AUCGGag -5'
13243 3' -57.3 NC_003401.1 + 10345 0.67 0.721592
Target:  5'- uGAUCUGCAgaggaccgGACGCCGugcuGCGUGGCgUCc -3'
miRNA:   3'- uUUGGGCGU--------UUGCGGC----CGCAUCGgAG- -5'
13243 3' -57.3 NC_003401.1 + 14176 0.67 0.770643
Target:  5'- --uCCCGCcccUGCCGGCGccggAGCCg- -3'
miRNA:   3'- uuuGGGCGuuuGCGGCCGCa---UCGGag -5'
13243 3' -57.3 NC_003401.1 + 14364 0.69 0.597998
Target:  5'- uGAGCCUGCAAACGuCUGGUGgcGgCUg -3'
miRNA:   3'- -UUUGGGCGUUUGC-GGCCGCauCgGAg -5'
13243 3' -57.3 NC_003401.1 + 17335 0.67 0.761048
Target:  5'- --cCCUGCGGAcucCGCUGGCGcGGCgUCu -3'
miRNA:   3'- uuuGGGCGUUU---GCGGCCGCaUCGgAG- -5'
13243 3' -57.3 NC_003401.1 + 18004 0.66 0.78011
Target:  5'- gAGAUCCGCGcgucccuguGCGCC-GCGUcauccgaaaacGGCCUCa -3'
miRNA:   3'- -UUUGGGCGUu--------UGCGGcCGCA-----------UCGGAG- -5'
13243 3' -57.3 NC_003401.1 + 20191 0.67 0.721592
Target:  5'- gGAGCCCGCGAACcaUGGCGUucauacacucGGCCcCg -3'
miRNA:   3'- -UUUGGGCGUUUGcgGCCGCA----------UCGGaG- -5'
13243 3' -57.3 NC_003401.1 + 23636 0.7 0.587672
Target:  5'- cGGGCgCCGCGAGCgGCCGGCagGUGGCg-- -3'
miRNA:   3'- -UUUG-GGCGUUUG-CGGCCG--CAUCGgag -5'
13243 3' -57.3 NC_003401.1 + 23812 0.69 0.64986
Target:  5'- gAAACCgGCGcggccauugGACGCUGGCGgcAGCCa- -3'
miRNA:   3'- -UUUGGgCGU---------UUGCGGCCGCa-UCGGag -5'
13243 3' -57.3 NC_003401.1 + 27859 0.69 0.639483
Target:  5'- --cCCCGCA---GCCGGCG-AGCCa- -3'
miRNA:   3'- uuuGGGCGUuugCGGCCGCaUCGGag -5'
13243 3' -57.3 NC_003401.1 + 31533 0.67 0.770643
Target:  5'- aAAACCCGuUAAGCGCCGccgaCGUGGUgUUg -3'
miRNA:   3'- -UUUGGGC-GUUUGCGGCc---GCAUCGgAG- -5'
13243 3' -57.3 NC_003401.1 + 43154 0.7 0.566103
Target:  5'- cGGCCCGCcucacggGAACGCCGGCGaccAGCg-- -3'
miRNA:   3'- uUUGGGCG-------UUUGCGGCCGCa--UCGgag -5'
13243 3' -57.3 NC_003401.1 + 47809 0.66 0.816521
Target:  5'- uGACCCGCGAcggauCGCCGGUugAGaCCa- -3'
miRNA:   3'- uUUGGGCGUUu----GCGGCCGcaUC-GGag -5'
13243 3' -57.3 NC_003401.1 + 51551 0.67 0.761048
Target:  5'- ----aCGUGAACGCCGGUGggGGUCUUg -3'
miRNA:   3'- uuuggGCGUUUGCGGCCGCa-UCGGAG- -5'
13243 3' -57.3 NC_003401.1 + 66702 0.67 0.751336
Target:  5'- cAGGCCCGUAGcUGCCuGGCGgcGCUc- -3'
miRNA:   3'- -UUUGGGCGUUuGCGG-CCGCauCGGag -5'
13243 3' -57.3 NC_003401.1 + 74726 0.67 0.721592
Target:  5'- uAAACCCGCAAcACGUCcaaaacgaaccaGGCGcGGCCa- -3'
miRNA:   3'- -UUUGGGCGUU-UGCGG------------CCGCaUCGGag -5'
13243 3' -57.3 NC_003401.1 + 74939 0.74 0.346424
Target:  5'- -uGCCCGcCAAGCGCCcaGGCGgcgGGCCa- -3'
miRNA:   3'- uuUGGGC-GUUUGCGG--CCGCa--UCGGag -5'
13243 3' -57.3 NC_003401.1 + 78434 0.68 0.690111
Target:  5'- cGAGuCCCGCAGACGCUaGCGUGuuuuugcGCgUCg -3'
miRNA:   3'- -UUU-GGGCGUUUGCGGcCGCAU-------CGgAG- -5'
13243 3' -57.3 NC_003401.1 + 88687 0.7 0.567126
Target:  5'- aGAACCUGUcgGCGCCGGC---GCCUa -3'
miRNA:   3'- -UUUGGGCGuuUGCGGCCGcauCGGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.