miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13243 5' -57.3 NC_003401.1 + 115745 0.66 0.84127
Target:  5'- uGGGGGCGGCUcggcuCCGgGGUgCUCCGGGu -3'
miRNA:   3'- gUCUCCGUUGGu----GGUgCCA-GGGGUUC- -5'
13243 5' -57.3 NC_003401.1 + 120246 0.66 0.84127
Target:  5'- gGGcccuGGCAACagACCGCauccacGUCCCCAAGa -3'
miRNA:   3'- gUCu---CCGUUGg-UGGUGc-----CAGGGGUUC- -5'
13243 5' -57.3 NC_003401.1 + 21304 0.66 0.84127
Target:  5'- cCAGAucGCccUCGCgGCGGUCCCCGAa -3'
miRNA:   3'- -GUCUc-CGuuGGUGgUGCCAGGGGUUc -5'
13243 5' -57.3 NC_003401.1 + 88563 0.66 0.840454
Target:  5'- -cGAGGUAACCGCCAgauuccgguaucuCGGUgCCgGGa -3'
miRNA:   3'- guCUCCGUUGGUGGU-------------GCCAgGGgUUc -5'
13243 5' -57.3 NC_003401.1 + 90728 0.66 0.839637
Target:  5'- gCAGAGGCGucgucagGCCAacagacagcguacCCGCGGccgCCCCu-- -3'
miRNA:   3'- -GUCUCCGU-------UGGU-------------GGUGCCa--GGGGuuc -5'
13243 5' -57.3 NC_003401.1 + 117955 0.66 0.824603
Target:  5'- uGGuGGCGcgcgGCCcCCACcGUCCCCAu- -3'
miRNA:   3'- gUCuCCGU----UGGuGGUGcCAGGGGUuc -5'
13243 5' -57.3 NC_003401.1 + 10226 0.67 0.789226
Target:  5'- aCAGAGGUGAUCGCaguguCGGUCUgCCAAc -3'
miRNA:   3'- -GUCUCCGUUGGUGgu---GCCAGG-GGUUc -5'
13243 5' -57.3 NC_003401.1 + 96044 0.67 0.789226
Target:  5'- aUAGAGGcCAACuCACUAacCGGUCUCCu-- -3'
miRNA:   3'- -GUCUCC-GUUG-GUGGU--GCCAGGGGuuc -5'
13243 5' -57.3 NC_003401.1 + 69927 0.67 0.773471
Target:  5'- cCAGAGGUuaguccgccaucuAGCgGCCACGGaUcgccuugaaagaugaCCCCAAGa -3'
miRNA:   3'- -GUCUCCG-------------UUGgUGGUGCC-A---------------GGGGUUC- -5'
13243 5' -57.3 NC_003401.1 + 53060 0.67 0.770651
Target:  5'- uGGAGGUcACCAUCAcucCGGUCCaaGGGg -3'
miRNA:   3'- gUCUCCGuUGGUGGU---GCCAGGggUUC- -5'
13243 5' -57.3 NC_003401.1 + 10824 0.67 0.770651
Target:  5'- ---cGGUuGCCGCCACGGUggugguccguggCUCCGAGg -3'
miRNA:   3'- gucuCCGuUGGUGGUGCCA------------GGGGUUC- -5'
13243 5' -57.3 NC_003401.1 + 14021 0.67 0.76782
Target:  5'- cCAGAGccgcGCGGCCAaucgauucgcgcacCCGgcCGGUCCCCGAc -3'
miRNA:   3'- -GUCUC----CGUUGGU--------------GGU--GCCAGGGGUUc -5'
13243 5' -57.3 NC_003401.1 + 16340 0.68 0.74188
Target:  5'- aGGAGGCcgcuGGCCACCcCGGUgaaCCCGu- -3'
miRNA:   3'- gUCUCCG----UUGGUGGuGCCAg--GGGUuc -5'
13243 5' -57.3 NC_003401.1 + 118052 0.68 0.74188
Target:  5'- --cGGGCGACguuuugcgCACCAUGGUCCCgAAu -3'
miRNA:   3'- gucUCCGUUG--------GUGGUGCCAGGGgUUc -5'
13243 5' -57.3 NC_003401.1 + 118693 0.68 0.722202
Target:  5'- gAGGGGCcGCUGgCGCGGaaauuUCCCCAGa -3'
miRNA:   3'- gUCUCCGuUGGUgGUGCC-----AGGGGUUc -5'
13243 5' -57.3 NC_003401.1 + 48032 0.68 0.720216
Target:  5'- aCAGAGGCAgacuaaucGCCaguccggACCACGGcccggacggaccgUCCCCGc- -3'
miRNA:   3'- -GUCUCCGU--------UGG-------UGGUGCC-------------AGGGGUuc -5'
13243 5' -57.3 NC_003401.1 + 89872 0.68 0.702213
Target:  5'- uUAGAGGCGGCCugcguCCAUGGgCUugagCCAGGg -3'
miRNA:   3'- -GUCUCCGUUGGu----GGUGCCaGG----GGUUC- -5'
13243 5' -57.3 NC_003401.1 + 66496 0.68 0.692125
Target:  5'- aGGAGGCAAcgcggcugguuuCCACC-CGGacaUCCCCGc- -3'
miRNA:   3'- gUCUCCGUU------------GGUGGuGCC---AGGGGUuc -5'
13243 5' -57.3 NC_003401.1 + 11986 0.69 0.671808
Target:  5'- -cGAGGUGGCCACCuuGCGGUaCCUCu-- -3'
miRNA:   3'- guCUCCGUUGGUGG--UGCCA-GGGGuuc -5'
13243 5' -57.3 NC_003401.1 + 20106 0.69 0.65136
Target:  5'- gCGGAGcCAAUgGCCGCGGcguccgcgUCCCCGGGc -3'
miRNA:   3'- -GUCUCcGUUGgUGGUGCC--------AGGGGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.