miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13244 3' -62 NC_003401.1 + 22676 0.65 0.624289
Target:  5'- cGGGcCCGCcucgacggaaaccaGGCGUgGuuagcCACCUGACGCACg -3'
miRNA:   3'- -CUC-GGUG--------------CCGCGgU-----GUGGGCUGCGUG- -5'
13244 3' -62 NC_003401.1 + 105489 0.66 0.617312
Target:  5'- aGGCCAgggUGGCgGCCGuCACCUGG-GCGCu -3'
miRNA:   3'- cUCGGU---GCCG-CGGU-GUGGGCUgCGUG- -5'
13244 3' -62 NC_003401.1 + 89444 0.66 0.607356
Target:  5'- aGGCaCACGGUucGCUGCGCagggaaCGACGCAg -3'
miRNA:   3'- cUCG-GUGCCG--CGGUGUGg-----GCUGCGUg -5'
13244 3' -62 NC_003401.1 + 85320 0.66 0.607356
Target:  5'- -uGCCACaucGUGCCuACACCgGgAUGCACg -3'
miRNA:   3'- cuCGGUGc--CGCGG-UGUGGgC-UGCGUG- -5'
13244 3' -62 NC_003401.1 + 28407 0.66 0.59841
Target:  5'- aGGGCCACcgcacguacguuucuGCGCCACcCUCGAUGCcgGCa -3'
miRNA:   3'- -CUCGGUGc--------------CGCGGUGuGGGCUGCG--UG- -5'
13244 3' -62 NC_003401.1 + 125734 0.66 0.597417
Target:  5'- gGGGUgACcaaGGCGCCACugCUGGCGg-- -3'
miRNA:   3'- -CUCGgUG---CCGCGGUGugGGCUGCgug -5'
13244 3' -62 NC_003401.1 + 23705 0.66 0.597417
Target:  5'- cGGCCACuaucuucgccaGCGCCAcCACCggccuccucugCGGCGCGCg -3'
miRNA:   3'- cUCGGUGc----------CGCGGU-GUGG-----------GCUGCGUG- -5'
13244 3' -62 NC_003401.1 + 132607 0.66 0.597417
Target:  5'- cGGGCC-CGGCggaGCgGCACCCGG-GgGCg -3'
miRNA:   3'- -CUCGGuGCCG---CGgUGUGGGCUgCgUG- -5'
13244 3' -62 NC_003401.1 + 122858 0.66 0.597417
Target:  5'- cGGUguUGGUGCUuaACACCCGGCgGCAa -3'
miRNA:   3'- cUCGguGCCGCGG--UGUGGGCUG-CGUg -5'
13244 3' -62 NC_003401.1 + 41183 0.66 0.587502
Target:  5'- uGAGCCACGGcCGCCGC-UCUGucaaacUGCAg -3'
miRNA:   3'- -CUCGGUGCC-GCGGUGuGGGCu-----GCGUg -5'
13244 3' -62 NC_003401.1 + 8873 0.66 0.577618
Target:  5'- cGGGgCGCGGCGuggaCCGCaACCUGugGC-Cg -3'
miRNA:   3'- -CUCgGUGCCGC----GGUG-UGGGCugCGuG- -5'
13244 3' -62 NC_003401.1 + 66714 0.66 0.577618
Target:  5'- -uGCCugGCGGCGCUcgcGCACCUuuGAcagcCGCACg -3'
miRNA:   3'- cuCGG--UGCCGCGG---UGUGGG--CU----GCGUG- -5'
13244 3' -62 NC_003401.1 + 105992 0.66 0.577618
Target:  5'- -cGCCGC-GCGCCugGCCaaGGCGCu- -3'
miRNA:   3'- cuCGGUGcCGCGGugUGGg-CUGCGug -5'
13244 3' -62 NC_003401.1 + 107800 0.66 0.577618
Target:  5'- aGGCuCGaugGGCcCCGCGCCCgGugGCGCg -3'
miRNA:   3'- cUCG-GUg--CCGcGGUGUGGG-CugCGUG- -5'
13244 3' -62 NC_003401.1 + 123368 0.66 0.567771
Target:  5'- uGGCCGCGGCGCgGCcCCUGGacccCGUg- -3'
miRNA:   3'- cUCGGUGCCGCGgUGuGGGCU----GCGug -5'
13244 3' -62 NC_003401.1 + 106952 0.66 0.567771
Target:  5'- gGGGCCACGGgaGCCucacgucaACACUCcaaccaGCGCACa -3'
miRNA:   3'- -CUCGGUGCCg-CGG--------UGUGGGc-----UGCGUG- -5'
13244 3' -62 NC_003401.1 + 78079 0.66 0.567771
Target:  5'- -uGCCugcCGGCGCCGCcaccgcugcaACCCGAgGUg- -3'
miRNA:   3'- cuCGGu--GCCGCGGUG----------UGGGCUgCGug -5'
13244 3' -62 NC_003401.1 + 122517 0.67 0.548211
Target:  5'- gGGGCCGCGGCGCgcgugacuuaCACACUgccacccaauauCGGC-CACg -3'
miRNA:   3'- -CUCGGUGCCGCG----------GUGUGG------------GCUGcGUG- -5'
13244 3' -62 NC_003401.1 + 117922 0.67 0.548211
Target:  5'- gGGGUCGCGGCgaggucacGCCGaACCgGGCGCGg -3'
miRNA:   3'- -CUCGGUGCCG--------CGGUgUGGgCUGCGUg -5'
13244 3' -62 NC_003401.1 + 117605 0.67 0.53851
Target:  5'- cGGCCGCGGCGaCCAaUGgCCGcCGCGg -3'
miRNA:   3'- cUCGGUGCCGC-GGU-GUgGGCuGCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.