Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13244 | 5' | -46.6 | NC_003401.1 | + | 10109 | 0.66 | 0.999824 |
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Target: 5'- uGGGUgcgGGAUCGGGGAG-AUACcCCGcAGu -3' miRNA: 3'- -UCUA---UCUAGCCCUUUuUAUGcGGC-UC- -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 121162 | 0.66 | 0.999774 |
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Target: 5'- cGGggGGcgCGGGggGc--GCGCCGGu -3' miRNA: 3'- -UCuaUCuaGCCCuuUuuaUGCGGCUc -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 90028 | 0.69 | 0.99802 |
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Target: 5'- aGGGUGcuUCGGGAAA---ACGCUGGGu -3' miRNA: 3'- -UCUAUcuAGCCCUUUuuaUGCGGCUC- -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 28117 | 0.69 | 0.997158 |
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Target: 5'- cGGAgaGGGUUGGGggGcaaACGCCGAc -3' miRNA: 3'- -UCUa-UCUAGCCCuuUuuaUGCGGCUc -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 132725 | 0.69 | 0.997158 |
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Target: 5'- gGGAgaacggGGAUCGGGAAA---ACG-CGAGg -3' miRNA: 3'- -UCUa-----UCUAGCCCUUUuuaUGCgGCUC- -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 121518 | 0.69 | 0.997158 |
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Target: 5'- cAGGUGaGUCGGGAGGGGgcaaggACGUCGGa -3' miRNA: 3'- -UCUAUcUAGCCCUUUUUa-----UGCGGCUc -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 117926 | 0.7 | 0.995301 |
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Target: 5'- cGGcgGGGUCGcGGcGAGGUcACGCCGAa -3' miRNA: 3'- -UCuaUCUAGC-CCuUUUUA-UGCGGCUc -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 104084 | 0.7 | 0.993391 |
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Target: 5'- cGGGUGGAUUGGcGGAGccguucggcCGCCGAGa -3' miRNA: 3'- -UCUAUCUAGCC-CUUUuuau-----GCGGCUC- -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 11799 | 0.71 | 0.988672 |
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Target: 5'- uAGGUGGGuucUCGGGAGGuguggGCGUCGAc -3' miRNA: 3'- -UCUAUCU---AGCCCUUUuua--UGCGGCUc -5' |
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| 13244 | 5' | -46.6 | NC_003401.1 | + | 106893 | 1.11 | 0.01711 |
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Target: 5'- aAGAUAGAUCGGGAAAAAUACGCCGAGa -3' miRNA: 3'- -UCUAUCUAGCCCUUUUUAUGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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