miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13245 3' -57.6 NC_003401.1 + 121357 0.66 0.864039
Target:  5'- uCCUG-GCCGaGACGGC-CC-GGUGGGg -3'
miRNA:   3'- -GGGCuUGGC-CUGCUGaGGuCCACCUg -5'
13245 3' -57.6 NC_003401.1 + 64045 0.66 0.864039
Target:  5'- uCCCGugcGugCGGAUcuAUUCUAGGUGGGg -3'
miRNA:   3'- -GGGC---UugGCCUGc-UGAGGUCCACCUg -5'
13245 3' -57.6 NC_003401.1 + 133717 0.66 0.856524
Target:  5'- aUCUGGGCCGGGugccCGGCggUCCGGGcGGGg -3'
miRNA:   3'- -GGGCUUGGCCU----GCUG--AGGUCCaCCUg -5'
13245 3' -57.6 NC_003401.1 + 132492 0.66 0.856524
Target:  5'- gCCCGGGCCGGcgggGCGGagggCCGGGagccgGGGg -3'
miRNA:   3'- -GGGCUUGGCC----UGCUga--GGUCCa----CCUg -5'
13245 3' -57.6 NC_003401.1 + 132570 0.66 0.848815
Target:  5'- uCCCGAuGCCGGGCGGCcgCCGcccGGcaUGG-Cg -3'
miRNA:   3'- -GGGCU-UGGCCUGCUGa-GGU---CC--ACCuG- -5'
13245 3' -57.6 NC_003401.1 + 132636 0.66 0.848815
Target:  5'- gCCGGACCgGGGCG-CUCCcGGgagucggccGGGCc -3'
miRNA:   3'- gGGCUUGG-CCUGCuGAGGuCCa--------CCUG- -5'
13245 3' -57.6 NC_003401.1 + 115156 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 115308 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 115346 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugaaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 115118 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 18250 0.66 0.840915
Target:  5'- aCCCGGACUuccGCGGagcUUCCAGGuUGGAUg -3'
miRNA:   3'- -GGGCUUGGcc-UGCU---GAGGUCC-ACCUG- -5'
13245 3' -57.6 NC_003401.1 + 115194 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 115232 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 115042 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 115384 0.66 0.840915
Target:  5'- aCCCc-ACCGGGgGACUugcaccccaCCGGG-GGACu -3'
miRNA:   3'- -GGGcuUGGCCUgCUGA---------GGUCCaCCUG- -5'
13245 3' -57.6 NC_003401.1 + 15560 0.67 0.824574
Target:  5'- gCUCaGGuCCGGGCGGCagggCUaAGGUGGGCa -3'
miRNA:   3'- -GGG-CUuGGCCUGCUGa---GG-UCCACCUG- -5'
13245 3' -57.6 NC_003401.1 + 47838 0.67 0.824574
Target:  5'- aCCCGGGCCGcGGgGACgguccgUCCGGGccgugguccGGACu -3'
miRNA:   3'- -GGGCUUGGC-CUgCUG------AGGUCCa--------CCUG- -5'
13245 3' -57.6 NC_003401.1 + 125149 0.67 0.816146
Target:  5'- gCCCGAGCuugCGGACauGACaguuUCCccGUGGGCg -3'
miRNA:   3'- -GGGCUUG---GCCUG--CUG----AGGucCACCUG- -5'
13245 3' -57.6 NC_003401.1 + 64514 0.67 0.807557
Target:  5'- aCCGGuuGCCGcGugGGCgguagCCAGG-GGAg -3'
miRNA:   3'- gGGCU--UGGC-CugCUGa----GGUCCaCCUg -5'
13245 3' -57.6 NC_003401.1 + 80386 0.67 0.80669
Target:  5'- uCCCauGgCGGACGgaccaccGCUCUgAGGUGGGCg -3'
miRNA:   3'- -GGGcuUgGCCUGC-------UGAGG-UCCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.