miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13247 5' -55 NC_003401.1 + 107785 0.66 0.914019
Target:  5'- -cGCGCCCggugGCGCGgacccgggagcgugGCGUCUuCUGGCAu -3'
miRNA:   3'- guCGUGGG----UGCGCa-------------UGCGGA-GAUUGU- -5'
13247 5' -55 NC_003401.1 + 18575 0.66 0.911604
Target:  5'- aCAGCuCCCugGUGUGgGCCgccaCUAuucACGa -3'
miRNA:   3'- -GUCGuGGGugCGCAUgCGGa---GAU---UGU- -5'
13247 5' -55 NC_003401.1 + 105674 0.66 0.911604
Target:  5'- gAGCACCCGC-CGUACGaguaCg--GACAg -3'
miRNA:   3'- gUCGUGGGUGcGCAUGCg---GagaUUGU- -5'
13247 5' -55 NC_003401.1 + 44246 0.66 0.898939
Target:  5'- -cGCACCCGCGCGgaauuaACGCg---GACAa -3'
miRNA:   3'- guCGUGGGUGCGCa-----UGCGgagaUUGU- -5'
13247 5' -55 NC_003401.1 + 73214 0.66 0.892244
Target:  5'- --cCGCCCAUacgguucCGUACGCCUUUGACu -3'
miRNA:   3'- gucGUGGGUGc------GCAUGCGGAGAUUGu -5'
13247 5' -55 NC_003401.1 + 118353 0.67 0.87075
Target:  5'- cCAGCGCCCGCG-GUGcCGCCg------ -3'
miRNA:   3'- -GUCGUGGGUGCgCAU-GCGGagauugu -5'
13247 5' -55 NC_003401.1 + 132371 0.67 0.87075
Target:  5'- gCGGCGCCgGC-CGgGCGCCUCcgGGCc -3'
miRNA:   3'- -GUCGUGGgUGcGCaUGCGGAGa-UUGu -5'
13247 5' -55 NC_003401.1 + 127732 0.67 0.87075
Target:  5'- -uGCGCCCAUGaaccCGCCUCUGuCAu -3'
miRNA:   3'- guCGUGGGUGCgcauGCGGAGAUuGU- -5'
13247 5' -55 NC_003401.1 + 27829 0.67 0.863133
Target:  5'- aCGGCGCagACGCGUAgGUCUgUGGCc -3'
miRNA:   3'- -GUCGUGggUGCGCAUgCGGAgAUUGu -5'
13247 5' -55 NC_003401.1 + 127328 0.67 0.863133
Target:  5'- gGGCAUCCGCagauGCGUGCGgcCCUCcugaUGGCAu -3'
miRNA:   3'- gUCGUGGGUG----CGCAUGC--GGAG----AUUGU- -5'
13247 5' -55 NC_003401.1 + 20611 0.67 0.863133
Target:  5'- cCAGC-CCUACGCugGCGCCUCccccGACu -3'
miRNA:   3'- -GUCGuGGGUGCGcaUGCGGAGa---UUGu -5'
13247 5' -55 NC_003401.1 + 7154 0.68 0.813121
Target:  5'- cCAGCGCUCuaACGCGUuaacccuaGCCUCUggUg -3'
miRNA:   3'- -GUCGUGGG--UGCGCAug------CGGAGAuuGu -5'
13247 5' -55 NC_003401.1 + 66709 0.69 0.794994
Target:  5'- gUAGCugCCugGCGgcgcucGCGCacCUUUGACAg -3'
miRNA:   3'- -GUCGugGGugCGCa-----UGCG--GAGAUUGU- -5'
13247 5' -55 NC_003401.1 + 122578 0.69 0.785697
Target:  5'- gCAGCGgCCGCGCGcUGCGCggCggAACAg -3'
miRNA:   3'- -GUCGUgGGUGCGC-AUGCGgaGa-UUGU- -5'
13247 5' -55 NC_003401.1 + 90904 0.69 0.776255
Target:  5'- gGGCGgCCGCGgGUACGCUgucuguuggcCUGACGa -3'
miRNA:   3'- gUCGUgGGUGCgCAUGCGGa---------GAUUGU- -5'
13247 5' -55 NC_003401.1 + 128518 0.69 0.776255
Target:  5'- gGGCACCUugGC---CGCC-CUGACAc -3'
miRNA:   3'- gUCGUGGGugCGcauGCGGaGAUUGU- -5'
13247 5' -55 NC_003401.1 + 63499 0.69 0.776255
Target:  5'- gCAGUcCCUGCGUGacgcGCGCCUCUuGCAg -3'
miRNA:   3'- -GUCGuGGGUGCGCa---UGCGGAGAuUGU- -5'
13247 5' -55 NC_003401.1 + 27983 0.73 0.572005
Target:  5'- aCAG-ACCUACGCGUcuGCGCCguacCUAGCGu -3'
miRNA:   3'- -GUCgUGGGUGCGCA--UGCGGa---GAUUGU- -5'
13247 5' -55 NC_003401.1 + 109029 1.08 0.003248
Target:  5'- uCAGCACCCACGCGUACGCCUCUAACAa -3'
miRNA:   3'- -GUCGUGGGUGCGCAUGCGGAGAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.