Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13249 | 5' | -50 | NC_003401.1 | + | 8648 | 0.66 | 0.994317 |
Target: 5'- aGGAAUaccccCACGU--GCUGggCUCCGCGg -3' miRNA: 3'- -CCUUGc----GUGCAauUGACgaGAGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 14484 | 0.67 | 0.992394 |
Target: 5'- uGGAcCGUuCGUUGGCgagcaGCacgUCUCCGCGa -3' miRNA: 3'- -CCUuGCGuGCAAUUGa----CG---AGAGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 16951 | 0.69 | 0.964773 |
Target: 5'- cGGugGagaACGUUAACUGCUCgaugggCACGa -3' miRNA: 3'- cCUugCg--UGCAAUUGACGAGag----GUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 18819 | 0.69 | 0.96711 |
Target: 5'- cGAGCGCGCGgaucgcgagcugguGCUGCggguucacgCUCCGCa -3' miRNA: 3'- cCUUGCGUGCaau-----------UGACGa--------GAGGUGc -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 28274 | 0.75 | 0.7735 |
Target: 5'- uGGuuGCGCAUGUUaucgaGACUGCUCUgCACc -3' miRNA: 3'- -CCu-UGCGUGCAA-----UUGACGAGAgGUGc -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 40154 | 0.68 | 0.985302 |
Target: 5'- cGGAGagaaccgacaGCACGU--ACUGCUUUCCcuugACGg -3' miRNA: 3'- -CCUUg---------CGUGCAauUGACGAGAGG----UGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 57405 | 0.67 | 0.988577 |
Target: 5'- cGGAcacACGUACGUUAACguugGCg--CUACGc -3' miRNA: 3'- -CCU---UGCGUGCAAUUGa---CGagaGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 69591 | 0.69 | 0.971155 |
Target: 5'- ---cCGCAUGgcGGCcgGCUCUCCGCc -3' miRNA: 3'- ccuuGCGUGCaaUUGa-CGAGAGGUGc -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 71967 | 0.66 | 0.99465 |
Target: 5'- gGGGGCGCGCGuUccagggugucccaccUGACUGUgaCUCgCGCGg -3' miRNA: 3'- -CCUUGCGUGC-A---------------AUUGACGa-GAG-GUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 74848 | 0.67 | 0.988577 |
Target: 5'- uGAACGCaagcaacgGCGUccuucuuCUGCgugCUCCACGa -3' miRNA: 3'- cCUUGCG--------UGCAauu----GACGa--GAGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 94620 | 0.68 | 0.98092 |
Target: 5'- -aAAUGCACGcauugacaaugaUAACUGCggcCUCCACGg -3' miRNA: 3'- ccUUGCGUGCa-----------AUUGACGa--GAGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 101134 | 0.68 | 0.983417 |
Target: 5'- cGGAugGCGCGUUucuagaacaGAUcGCUCgagaCGCGg -3' miRNA: 3'- -CCUugCGUGCAA---------UUGaCGAGag--GUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 112999 | 1.12 | 0.006333 |
Target: 5'- gGGAACGCACGUUAACUGCUCUCCACGa -3' miRNA: 3'- -CCUUGCGUGCAAUUGACGAGAGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 113119 | 0.79 | 0.575027 |
Target: 5'- -cGGCGCACGUcGAUUGCUCUCUAgGg -3' miRNA: 3'- ccUUGCGUGCAaUUGACGAGAGGUgC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 114025 | 0.69 | 0.969335 |
Target: 5'- -cGACGC-CGUUGACggagaugaaugaugGUUCUCCAUGa -3' miRNA: 3'- ccUUGCGuGCAAUUGa-------------CGAGAGGUGC- -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 114190 | 0.72 | 0.885288 |
Target: 5'- gGGAACGCGCGcUGACcGCcCUCCcCa -3' miRNA: 3'- -CCUUGCGUGCaAUUGaCGaGAGGuGc -5' |
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13249 | 5' | -50 | NC_003401.1 | + | 121173 | 0.69 | 0.976662 |
Target: 5'- gGGGGCGCGcCGguuGCUGCUg-CCGCu -3' miRNA: 3'- -CCUUGCGU-GCaauUGACGAgaGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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