miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13250 3' -50 NC_003401.1 + 43477 0.66 0.994011
Target:  5'- -cAugUGCacAGGGGCGUGCGUgaGCu -3'
miRNA:   3'- auUugACGcuUUCCCGCAUGUAg-CGu -5'
13250 3' -50 NC_003401.1 + 79774 0.66 0.994011
Target:  5'- cAGAUaGCGgcAGGGCGUguuccccggGCAaCGCAa -3'
miRNA:   3'- aUUUGaCGCuuUCCCGCA---------UGUaGCGU- -5'
13250 3' -50 NC_003401.1 + 27716 0.66 0.994011
Target:  5'- -cGGCUGCG--GGGGCGgugGUUGCGu -3'
miRNA:   3'- auUUGACGCuuUCCCGCaugUAGCGU- -5'
13250 3' -50 NC_003401.1 + 85644 0.67 0.984365
Target:  5'- cGGACgguccCGAAAGGGCGUgaaGCAUucCGCGc -3'
miRNA:   3'- aUUUGac---GCUUUCCCGCA---UGUA--GCGU- -5'
13250 3' -50 NC_003401.1 + 8848 0.67 0.982344
Target:  5'- --cACUGCGGAAaccuGGG-GUACuUCGCGg -3'
miRNA:   3'- auuUGACGCUUU----CCCgCAUGuAGCGU- -5'
13250 3' -50 NC_003401.1 + 117939 0.67 0.982344
Target:  5'- ----gUGCGcauGAGGGCGgcgGgGUCGCGg -3'
miRNA:   3'- auuugACGCu--UUCCCGCa--UgUAGCGU- -5'
13250 3' -50 NC_003401.1 + 89513 0.68 0.972264
Target:  5'- aUAAACgggUGUGAgGAGGGCGUcuuuuuGCAUgGCAa -3'
miRNA:   3'- -AUUUG---ACGCU-UUCCCGCA------UGUAgCGU- -5'
13250 3' -50 NC_003401.1 + 22145 0.68 0.9692
Target:  5'- -cAGCUGCGucuacgucGAGGGUGUuucuaaGUCGCAu -3'
miRNA:   3'- auUUGACGCu-------UUCCCGCAug----UAGCGU- -5'
13250 3' -50 NC_003401.1 + 52811 0.69 0.962363
Target:  5'- -uAACUGCGGGaauaucAGGGCGcgACAUgGUAc -3'
miRNA:   3'- auUUGACGCUU------UCCCGCa-UGUAgCGU- -5'
13250 3' -50 NC_003401.1 + 6530 0.69 0.958577
Target:  5'- aAGACUGUGGAGGGGCuGUcuCGUuccCGCGg -3'
miRNA:   3'- aUUUGACGCUUUCCCG-CAu-GUA---GCGU- -5'
13250 3' -50 NC_003401.1 + 113275 0.7 0.94085
Target:  5'- gUGAACcGCGGAAaGGUGUGCAcaUCGUAa -3'
miRNA:   3'- -AUUUGaCGCUUUcCCGCAUGU--AGCGU- -5'
13250 3' -50 NC_003401.1 + 36893 0.71 0.885264
Target:  5'- cGGACgaagGCGAGAGaGGCGUAuCAUUGUu -3'
miRNA:   3'- aUUUGa---CGCUUUC-CCGCAU-GUAGCGu -5'
13250 3' -50 NC_003401.1 + 121470 0.73 0.836691
Target:  5'- gGGAUUGCgGAGGGGGCGaggACGUCgGCGu -3'
miRNA:   3'- aUUUGACG-CUUUCCCGCa--UGUAG-CGU- -5'
13250 3' -50 NC_003401.1 + 113077 1.08 0.009459
Target:  5'- gUAAACUGCGAAAGGGCGUACAUCGCAg -3'
miRNA:   3'- -AUUUGACGCUUUCCCGCAUGUAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.