miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13253 3' -49.8 NC_003401.1 + 23158 0.67 0.982542
Target:  5'- --cGCgGGGCCCAAAGG---GCCCCGc -3'
miRNA:   3'- guuCG-CCUGGGUUUUUuugUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 22820 0.67 0.981244
Target:  5'- gAGGCGGGCCCGGGccgcggguauuaauGGACGCCgUCAAc -3'
miRNA:   3'- gUUCGCCUGGGUUUu-------------UUUGUGG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 69194 0.67 0.980339
Target:  5'- cCAGG-GGugCCGGGAGAA-GCCCCGGu -3'
miRNA:   3'- -GUUCgCCugGGUUUUUUUgUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 123804 0.67 0.97964
Target:  5'- gCGAGCGGACauaaaggGGAGAcgcgguuuccuggcGACACCCCGGu -3'
miRNA:   3'- -GUUCGCCUGgg-----UUUUU--------------UUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 113756 0.68 0.977935
Target:  5'- gAAG-GGACCCAAAGAcACAguCUCCAGu -3'
miRNA:   3'- gUUCgCCUGGGUUUUUuUGU--GGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 129949 0.68 0.975321
Target:  5'- uGAGUaGGCCCAAGAAAAUgauaaACCCUAu -3'
miRNA:   3'- gUUCGcCUGGGUUUUUUUG-----UGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 132206 0.68 0.972488
Target:  5'- -cGGcCGGGCCCGGAG--GCGCCCg-- -3'
miRNA:   3'- guUC-GCCUGGGUUUUuuUGUGGGguu -5'
13253 3' -49.8 NC_003401.1 + 52284 0.68 0.972488
Target:  5'- gGAGCGucuGCCCAGAGug-UGCCCCAAa -3'
miRNA:   3'- gUUCGCc--UGGGUUUUuuuGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 21318 0.68 0.969427
Target:  5'- -cGGCGGucCCCGAAGcccuGCGCCgCCAAa -3'
miRNA:   3'- guUCGCCu-GGGUUUUuu--UGUGG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 121205 0.68 0.969427
Target:  5'- uCAGGUauugGGACCCAGGAucGACcCCCCu- -3'
miRNA:   3'- -GUUCG----CCUGGGUUUUu-UUGuGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 113381 0.68 0.969427
Target:  5'- aCGAGaCGGaAUCCAAA-GAACACgCCCGAu -3'
miRNA:   3'- -GUUC-GCC-UGGGUUUuUUUGUG-GGGUU- -5'
13253 3' -49.8 NC_003401.1 + 109472 0.68 0.966131
Target:  5'- aGGGCGGGCCaCGGAGcccGuuCGCCUCAAc -3'
miRNA:   3'- gUUCGCCUGG-GUUUU---UuuGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 10105 0.68 0.966131
Target:  5'- --uGCGGGaUCGGGGAGAUACCCCGc -3'
miRNA:   3'- guuCGCCUgGGUUUUUUUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 83870 0.69 0.962592
Target:  5'- --cGCGGAUgCAAAcGAACACCUCu- -3'
miRNA:   3'- guuCGCCUGgGUUUuUUUGUGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 107597 0.69 0.95476
Target:  5'- gAAGUGGACCCuaugccAGAAGACGCCa--- -3'
miRNA:   3'- gUUCGCCUGGGu-----UUUUUUGUGGgguu -5'
13253 3' -49.8 NC_003401.1 + 41529 0.69 0.950455
Target:  5'- --cGCGGGCCU------GCGCCCCAc -3'
miRNA:   3'- guuCGCCUGGGuuuuuuUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 30539 0.7 0.930556
Target:  5'- gGAGCuGGCCCAAAucacacccAGAuCGCCCCAc -3'
miRNA:   3'- gUUCGcCUGGGUUU--------UUUuGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 14959 0.7 0.9249
Target:  5'- uCAAGCGGACCgAGcGAcuGGC-CCCCGu -3'
miRNA:   3'- -GUUCGCCUGGgUUuUU--UUGuGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 17657 0.7 0.918969
Target:  5'- -cGGCGGcGCgCGcucGGAGGGCACCCCAAa -3'
miRNA:   3'- guUCGCC-UGgGU---UUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 132436 0.71 0.90023
Target:  5'- --cGCGGGCCCGGGGGGcgcgcgggggacccuCGCCCCGGg -3'
miRNA:   3'- guuCGCCUGGGUUUUUUu--------------GUGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.