Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13254 | 5' | -43.9 | NC_003401.1 | + | 12806 | 0.66 | 0.999985 |
Target: 5'- aGCAGGcaacggacgaccUAGCGgcgccCCAGCUGCAGUUc- -3' miRNA: 3'- -UGUUC------------AUCGUau---GGUUGACGUUAAuu -5' |
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13254 | 5' | -43.9 | NC_003401.1 | + | 33289 | 0.67 | 0.999959 |
Target: 5'- gACAGGUAGCGUgggcguaccauGCCGuguuCUGUAcgUGGg -3' miRNA: 3'- -UGUUCAUCGUA-----------UGGUu---GACGUuaAUU- -5' |
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13254 | 5' | -43.9 | NC_003401.1 | + | 90125 | 0.68 | 0.999863 |
Target: 5'- uAUGAGUGGCAUGCaacCUGUggUUGc -3' miRNA: 3'- -UGUUCAUCGUAUGguuGACGuuAAUu -5' |
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13254 | 5' | -43.9 | NC_003401.1 | + | 27958 | 0.69 | 0.999695 |
Target: 5'- ----cUAGCGUACCAGCcGCAGUg-- -3' miRNA: 3'- uguucAUCGUAUGGUUGaCGUUAauu -5' |
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13254 | 5' | -43.9 | NC_003401.1 | + | 27701 | 0.69 | 0.9995 |
Target: 5'- gGCGuGGUGGCucGCCGGCUGCGGg--- -3' miRNA: 3'- -UGU-UCAUCGuaUGGUUGACGUUaauu -5' |
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13254 | 5' | -43.9 | NC_003401.1 | + | 113780 | 1.07 | 0.039707 |
Target: 5'- aACAAGUAGCAUACCAACUGCAAUUAAu -3' miRNA: 3'- -UGUUCAUCGUAUGGUUGACGUUAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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