miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13255 3' -50.2 NC_003401.1 + 61599 0.66 0.991647
Target:  5'- aGGGGGCGGUUc-CGuGCauaGUAUGCGUc -3'
miRNA:   3'- -CUCCCGCCAAuuGCuCGc--UAUAUGUA- -5'
13255 3' -50.2 NC_003401.1 + 28149 0.66 0.989007
Target:  5'- aAGGGaaCGGUggcgcGACGGGCGGUgcGUACGa -3'
miRNA:   3'- cUCCC--GCCAa----UUGCUCGCUA--UAUGUa -5'
13255 3' -50.2 NC_003401.1 + 67345 0.66 0.987464
Target:  5'- gGAGGGCGuGUUuAC-AGUGGUGUAgGUg -3'
miRNA:   3'- -CUCCCGC-CAAuUGcUCGCUAUAUgUA- -5'
13255 3' -50.2 NC_003401.1 + 37132 0.67 0.985758
Target:  5'- gGGGGGCGGUgcagcuauccAACG-GCGA-GUACGUc -3'
miRNA:   3'- -CUCCCGCCAa---------UUGCuCGCUaUAUGUA- -5'
13255 3' -50.2 NC_003401.1 + 120798 0.67 0.983881
Target:  5'- gGGGGGCGG---AUGGGUGAUGU-CGUu -3'
miRNA:   3'- -CUCCCGCCaauUGCUCGCUAUAuGUA- -5'
13255 3' -50.2 NC_003401.1 + 92872 0.67 0.977122
Target:  5'- gGGGGGCGGgcaccgAACagGGGCGGUAUGu-- -3'
miRNA:   3'- -CUCCCGCCaa----UUG--CUCGCUAUAUgua -5'
13255 3' -50.2 NC_003401.1 + 100972 0.69 0.953654
Target:  5'- cGGGGUGGUcGACG-GCGGUuUGCGc -3'
miRNA:   3'- cUCCCGCCAaUUGCuCGCUAuAUGUa -5'
13255 3' -50.2 NC_003401.1 + 106701 0.7 0.917718
Target:  5'- uGAGGuGCGGUUGACG-GUGuguUACGUg -3'
miRNA:   3'- -CUCC-CGCCAAUUGCuCGCuauAUGUA- -5'
13255 3' -50.2 NC_003401.1 + 32331 0.71 0.884041
Target:  5'- aAGGGCGGUggugcCGGGCGGUGgcgcGCGUc -3'
miRNA:   3'- cUCCCGCCAauu--GCUCGCUAUa---UGUA- -5'
13255 3' -50.2 NC_003401.1 + 35630 0.73 0.808207
Target:  5'- uAGGGCGGUac-CGGGCGGUGUAa-- -3'
miRNA:   3'- cUCCCGCCAauuGCUCGCUAUAUgua -5'
13255 3' -50.2 NC_003401.1 + 114150 1.06 0.011457
Target:  5'- gGAGGGCGGUUAACGAGCGAUAUACAUa -3'
miRNA:   3'- -CUCCCGCCAAUUGCUCGCUAUAUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.