Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13255 | 3' | -50.2 | NC_003401.1 | + | 28149 | 0.66 | 0.989007 |
Target: 5'- aAGGGaaCGGUggcgcGACGGGCGGUgcGUACGa -3' miRNA: 3'- cUCCC--GCCAa----UUGCUCGCUA--UAUGUa -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 32331 | 0.71 | 0.884041 |
Target: 5'- aAGGGCGGUggugcCGGGCGGUGgcgcGCGUc -3' miRNA: 3'- cUCCCGCCAauu--GCUCGCUAUa---UGUA- -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 35630 | 0.73 | 0.808207 |
Target: 5'- uAGGGCGGUac-CGGGCGGUGUAa-- -3' miRNA: 3'- cUCCCGCCAauuGCUCGCUAUAUgua -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 37132 | 0.67 | 0.985758 |
Target: 5'- gGGGGGCGGUgcagcuauccAACG-GCGA-GUACGUc -3' miRNA: 3'- -CUCCCGCCAa---------UUGCuCGCUaUAUGUA- -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 61599 | 0.66 | 0.991647 |
Target: 5'- aGGGGGCGGUUc-CGuGCauaGUAUGCGUc -3' miRNA: 3'- -CUCCCGCCAAuuGCuCGc--UAUAUGUA- -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 67345 | 0.66 | 0.987464 |
Target: 5'- gGAGGGCGuGUUuAC-AGUGGUGUAgGUg -3' miRNA: 3'- -CUCCCGC-CAAuUGcUCGCUAUAUgUA- -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 92872 | 0.67 | 0.977122 |
Target: 5'- gGGGGGCGGgcaccgAACagGGGCGGUAUGu-- -3' miRNA: 3'- -CUCCCGCCaa----UUG--CUCGCUAUAUgua -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 100972 | 0.69 | 0.953654 |
Target: 5'- cGGGGUGGUcGACG-GCGGUuUGCGc -3' miRNA: 3'- cUCCCGCCAaUUGCuCGCUAuAUGUa -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 106701 | 0.7 | 0.917718 |
Target: 5'- uGAGGuGCGGUUGACG-GUGuguUACGUg -3' miRNA: 3'- -CUCC-CGCCAAUUGCuCGCuauAUGUA- -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 114150 | 1.06 | 0.011457 |
Target: 5'- gGAGGGCGGUUAACGAGCGAUAUACAUa -3' miRNA: 3'- -CUCCCGCCAAUUGCUCGCUAUAUGUA- -5' |
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13255 | 3' | -50.2 | NC_003401.1 | + | 120798 | 0.67 | 0.983881 |
Target: 5'- gGGGGGCGG---AUGGGUGAUGU-CGUu -3' miRNA: 3'- -CUCCCGCCaauUGCUCGCUAUAuGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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