miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13257 5' -51.2 NC_003401.1 + 19796 0.66 0.990182
Target:  5'- gGCAGCuccAGGGcGCGCGAUcGGugGCc -3'
miRNA:   3'- gUGUUG---UCCCuCGCGCUGaUUugUGc -5'
13257 5' -51.2 NC_003401.1 + 101119 0.66 0.989367
Target:  5'- aCGCGACAGaGGAcacggaugGCGCGuuuCUAgaacagaucgcucgaGACGCGg -3'
miRNA:   3'- -GUGUUGUC-CCU--------CGCGCu--GAU---------------UUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 81563 0.66 0.988795
Target:  5'- aUACGACcaGGGGGGUGgGuCUGGACGUGa -3'
miRNA:   3'- -GUGUUG--UCCCUCGCgCuGAUUUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 17274 0.66 0.985569
Target:  5'- gGCGACuGGGAG-GUGACUuuuCACc -3'
miRNA:   3'- gUGUUGuCCCUCgCGCUGAuuuGUGc -5'
13257 5' -51.2 NC_003401.1 + 27662 0.66 0.984475
Target:  5'- gGCGGCGGGGGcuggaguugccggcuGCGUGGCgAGAC-CGg -3'
miRNA:   3'- gUGUUGUCCCU---------------CGCGCUGaUUUGuGC- -5'
13257 5' -51.2 NC_003401.1 + 132688 0.67 0.97946
Target:  5'- -uCGGCGGGGcccGGCGCGG---GGCGCGa -3'
miRNA:   3'- guGUUGUCCC---UCGCGCUgauUUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 122531 0.67 0.97946
Target:  5'- gGCGACaagguaAGGGGGcCGCGGC---GCGCGu -3'
miRNA:   3'- gUGUUG------UCCCUC-GCGCUGauuUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 63569 0.67 0.978757
Target:  5'- gACcACGGGGGGCGgGGCUAcuucuaacccagagGGCcCGg -3'
miRNA:   3'- gUGuUGUCCCUCGCgCUGAU--------------UUGuGC- -5'
13257 5' -51.2 NC_003401.1 + 18459 0.67 0.977048
Target:  5'- gCACcACGGGGcagGGCGCGGCggcggcCACa -3'
miRNA:   3'- -GUGuUGUCCC---UCGCGCUGauuu--GUGc -5'
13257 5' -51.2 NC_003401.1 + 78237 0.67 0.97161
Target:  5'- uGCAGCGGuGGcGGCGCcGGC-AGGCACa -3'
miRNA:   3'- gUGUUGUC-CC-UCGCG-CUGaUUUGUGc -5'
13257 5' -51.2 NC_003401.1 + 17849 0.67 0.968569
Target:  5'- gGCGcACAGGGAcGCGCGGaucuccccgAAAUACGu -3'
miRNA:   3'- gUGU-UGUCCCU-CGCGCUga-------UUUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 85702 0.67 0.968569
Target:  5'- gCGCAACucaaGGcGGAGCGCGcACac-GCGCGg -3'
miRNA:   3'- -GUGUUG----UC-CCUCGCGC-UGauuUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 117928 0.67 0.968569
Target:  5'- gGCGGCGGGGu-CGCGGCgagguCACGc -3'
miRNA:   3'- gUGUUGUCCCucGCGCUGauuu-GUGC- -5'
13257 5' -51.2 NC_003401.1 + 23816 0.68 0.965302
Target:  5'- gGCGugGGGGAaaGCGCGGCgc--CACc -3'
miRNA:   3'- gUGUugUCCCU--CGCGCUGauuuGUGc -5'
13257 5' -51.2 NC_003401.1 + 79963 0.68 0.965302
Target:  5'- gACAAUagucaAGGGGGCGCGGuugcguugccCgggGAACACGc -3'
miRNA:   3'- gUGUUG-----UCCCUCGCGCU----------Ga--UUUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 104110 0.68 0.95807
Target:  5'- cCAUAGC-GGGAuucGCGUGGCUGGAaauCGCGa -3'
miRNA:   3'- -GUGUUGuCCCU---CGCGCUGAUUU---GUGC- -5'
13257 5' -51.2 NC_003401.1 + 111572 0.68 0.949867
Target:  5'- uGCGACccGGuGUGCGucCUGAACACGu -3'
miRNA:   3'- gUGUUGucCCuCGCGCu-GAUUUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 18130 0.69 0.930426
Target:  5'- -cCAACAGGGAGCgGCcGCUcgGgGCGa -3'
miRNA:   3'- guGUUGUCCCUCG-CGcUGAuuUgUGC- -5'
13257 5' -51.2 NC_003401.1 + 30212 0.69 0.930426
Target:  5'- aACGACGuGGGGGCGUcuGGCgc-GCGCGa -3'
miRNA:   3'- gUGUUGU-CCCUCGCG--CUGauuUGUGC- -5'
13257 5' -51.2 NC_003401.1 + 126891 0.69 0.930426
Target:  5'- aCGCGGCAGuGGGCGCGA---GAUACGc -3'
miRNA:   3'- -GUGUUGUCcCUCGCGCUgauUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.