miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13258 3' -42 NC_003401.1 + 69244 0.66 1
Target:  5'- --uGGGGcgCUGAGGAUGAu-UUCUGg -3'
miRNA:   3'- aauCCCUuaGAUUUUUGCUuuAGGAC- -5'
13258 3' -42 NC_003401.1 + 94857 0.66 1
Target:  5'- -aGGGGAgaGUCUGGuGugGAg--CCUGg -3'
miRNA:   3'- aaUCCCU--UAGAUUuUugCUuuaGGAC- -5'
13258 3' -42 NC_003401.1 + 95955 0.67 1
Target:  5'- -cGGGGAAaggCUAAGcGACGAGGUUCg- -3'
miRNA:   3'- aaUCCCUUa--GAUUU-UUGCUUUAGGac -5'
13258 3' -42 NC_003401.1 + 82566 0.67 1
Target:  5'- -aAGGGAacgucgaAUCUAcgGGGGCGGuugcGGUCCUGu -3'
miRNA:   3'- aaUCCCU-------UAGAU--UUUUGCU----UUAGGAC- -5'
13258 3' -42 NC_003401.1 + 17145 0.67 1
Target:  5'- --cGGGAAUCUGGugcugucuGACGuAAUCCg- -3'
miRNA:   3'- aauCCCUUAGAUUu-------UUGCuUUAGGac -5'
13258 3' -42 NC_003401.1 + 94051 0.69 0.999993
Target:  5'- -cAGGGGuUCUGGAAAUGAAG-CCa- -3'
miRNA:   3'- aaUCCCUuAGAUUUUUGCUUUaGGac -5'
13258 3' -42 NC_003401.1 + 108732 0.7 0.999979
Target:  5'- -aGGGGAGUCgaccGAGACGGAgauAUCCc- -3'
miRNA:   3'- aaUCCCUUAGau--UUUUGCUU---UAGGac -5'
13258 3' -42 NC_003401.1 + 52680 0.7 0.999979
Target:  5'- -cAGGGAAUCUGcuAAACGcGGAUCUUa -3'
miRNA:   3'- aaUCCCUUAGAUu-UUUGC-UUUAGGAc -5'
13258 3' -42 NC_003401.1 + 62685 0.71 0.999926
Target:  5'- -cGGGGAGUUUGAGAAgGAAAcguuuUCCg- -3'
miRNA:   3'- aaUCCCUUAGAUUUUUgCUUU-----AGGac -5'
13258 3' -42 NC_003401.1 + 123544 0.75 0.993703
Target:  5'- -cAGGGGAUCcGAAAacACGggGUCCa- -3'
miRNA:   3'- aaUCCCUUAGaUUUU--UGCuuUAGGac -5'
13258 3' -42 NC_003401.1 + 114690 1.07 0.073859
Target:  5'- aUUAGGGAAUCUAAAAACGAAAUCCUGc -3'
miRNA:   3'- -AAUCCCUUAGAUUUUUGCUUUAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.