miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13260 3' -54.2 NC_003401.1 + 25633 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26232 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 119603 0.66 0.936219
Target:  5'- cGGuAUUCCCCu--CCCG-GugUUGCUGg -3'
miRNA:   3'- -CC-UAAGGGGuuuGGGCuCugGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 25533 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25583 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26465 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26515 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26415 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26215 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26315 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26365 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25816 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26565 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26065 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26265 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26165 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26115 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 26015 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 25766 0.66 0.931145
Target:  5'- gGGA--CCCUcggggaacgggGAGCCCGGGACCCuCg- -3'
miRNA:   3'- -CCUaaGGGG-----------UUUGGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 68502 0.66 0.931145
Target:  5'- gGGGUUCCCggguuaAAACCCGcGGGgCCGCc- -3'
miRNA:   3'- -CCUAAGGGg-----UUUGGGC-UCUgGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.