Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13261 | 5' | -48.4 | NC_003401.1 | + | 16627 | 0.66 | 0.997301 |
Target: 5'- ------uUUCCGCCUcuagcuuaaUGggUGGGGGGAa -3' miRNA: 3'- uauauuuAAGGUGGG---------ACa-AUCCCCCU- -5' |
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13261 | 5' | -48.4 | NC_003401.1 | + | 69575 | 0.66 | 0.996786 |
Target: 5'- ------uUUCCAUCCUcUUGGcGGGGAc -3' miRNA: 3'- uauauuuAAGGUGGGAcAAUC-CCCCU- -5' |
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13261 | 5' | -48.4 | NC_003401.1 | + | 117045 | 0.68 | 0.989059 |
Target: 5'- uAUAUAGGUUUgaauuaauuaCAUCCcGUUAGGGGGu -3' miRNA: 3'- -UAUAUUUAAG----------GUGGGaCAAUCCCCCu -5' |
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13261 | 5' | -48.4 | NC_003401.1 | + | 117268 | 0.87 | 0.248542 |
Target: 5'- uAUAUAAAUUUUACCCUGUU-GGGGGAa -3' miRNA: 3'- -UAUAUUUAAGGUGGGACAAuCCCCCU- -5' |
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13261 | 5' | -48.4 | NC_003401.1 | + | 116907 | 1.08 | 0.01455 |
Target: 5'- uAUAUAAAUUCCACCCUGUUAGGGGGAu -3' miRNA: 3'- -UAUAUUUAAGGUGGGACAAUCCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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