Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13262 | 3' | -52.3 | NC_003401.1 | + | 18184 | 0.66 | 0.978697 |
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Target: 5'- cGGCCGCCgguGUGGGUgggcaggacgGGUccgGAcUGGCc -3' miRNA: 3'- -CCGGCGG---CGCCCAa---------UCAaa-CUaACUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 105045 | 0.66 | 0.976241 |
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Target: 5'- gGGCCGUCGgaaccgGGGUUAGcgUGGUgGAa -3' miRNA: 3'- -CCGGCGGCg-----CCCAAUCaaACUAaCUg -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 100812 | 0.66 | 0.976241 |
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Target: 5'- cGGCaCGCgUGCGaGGUUGGa-UGAUuUGACg -3' miRNA: 3'- -CCG-GCG-GCGC-CCAAUCaaACUA-ACUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 64375 | 0.66 | 0.973583 |
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Target: 5'- -aCCGCC-CGGGUacggAGgccccccagUGAUUGACa -3' miRNA: 3'- ccGGCGGcGCCCAa---UCaa-------ACUAACUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 62249 | 0.67 | 0.964328 |
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Target: 5'- cGGUCaCgGUGaGGUUGGUgaGGUUGACg -3' miRNA: 3'- -CCGGcGgCGC-CCAAUCAaaCUAACUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 104934 | 0.7 | 0.875065 |
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Target: 5'- gGGCaCGCCGCGGGgcagAGgccgcaacgugGAUgGACa -3' miRNA: 3'- -CCG-GCGGCGCCCaa--UCaaa--------CUAaCUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 69737 | 0.7 | 0.870539 |
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Target: 5'- cGGCCGCCauGCGGGacucUGGagUG-UUGGCg -3' miRNA: 3'- -CCGGCGG--CGCCCa---AUCaaACuAACUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 90904 | 0.72 | 0.784206 |
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Target: 5'- gGGCgGCCGCGGGUacgcuGUcUG-UUGGCc -3' miRNA: 3'- -CCGgCGGCGCCCAau---CAaACuAACUG- -5' |
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| 13262 | 3' | -52.3 | NC_003401.1 | + | 117621 | 1.13 | 0.00316 |
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Target: 5'- uGGCCGCCGCGGGUUAGUUUGAUUGACg -3' miRNA: 3'- -CCGGCGGCGCCCAAUCAAACUAACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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