miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13263 3' -60 NC_003401.1 + 22760 0.66 0.73886
Target:  5'- -aCGGGCGuGUcuAacuacGGUCGCCCCggGGu -3'
miRNA:   3'- ggGCCCGC-CGuuU-----UCGGCGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 16185 0.66 0.73886
Target:  5'- aCCgGGGUGGcCAGcGGCCuccUCCCAUGc -3'
miRNA:   3'- -GGgCCCGCC-GUUuUCGGc--GGGGUACc -5'
13263 3' -60 NC_003401.1 + 96689 0.66 0.729327
Target:  5'- gUCUGGGgGGCAGAGuCCGCgUCCAUc- -3'
miRNA:   3'- -GGGCCCgCCGUUUUcGGCG-GGGUAcc -5'
13263 3' -60 NC_003401.1 + 64865 0.66 0.729327
Target:  5'- gUCCGGGCaacGCuAAAGGCUaGUCCgGUGGc -3'
miRNA:   3'- -GGGCCCGc--CG-UUUUCGG-CGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 132834 0.66 0.729327
Target:  5'- gCCGGGCcccGCcGAGG-CGCCCCG-GGc -3'
miRNA:   3'- gGGCCCGc--CGuUUUCgGCGGGGUaCC- -5'
13263 3' -60 NC_003401.1 + 132507 0.66 0.719714
Target:  5'- gCCC-GGCGGCGccgcGCCccgacGCCCCccGGg -3'
miRNA:   3'- -GGGcCCGCCGUuuu-CGG-----CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 77858 0.66 0.719714
Target:  5'- --gGGGCGGUAAGGGaaagGCCCCGUu- -3'
miRNA:   3'- gggCCCGCCGUUUUCgg--CGGGGUAcc -5'
13263 3' -60 NC_003401.1 + 69749 0.66 0.719714
Target:  5'- --aGGGCGGa--GAGCCGgCCgCCAUGcGg -3'
miRNA:   3'- gggCCCGCCguuUUCGGC-GG-GGUAC-C- -5'
13263 3' -60 NC_003401.1 + 17206 0.66 0.718749
Target:  5'- gCUCGaGCGGCGAggagcgaccaacgGAGaCCGCCaCCAUGc -3'
miRNA:   3'- -GGGCcCGCCGUU-------------UUC-GGCGG-GGUACc -5'
13263 3' -60 NC_003401.1 + 17850 0.66 0.71003
Target:  5'- aCCGGGCaGGCuuucGGUCGCgCagGUGGg -3'
miRNA:   3'- gGGCCCG-CCGuuu-UCGGCGgGg-UACC- -5'
13263 3' -60 NC_003401.1 + 14521 0.67 0.700284
Target:  5'- uCCgGGGCGacgggcuuGCGGucgcgcGCCGUCCaCAUGGa -3'
miRNA:   3'- -GGgCCCGC--------CGUUuu----CGGCGGG-GUACC- -5'
13263 3' -60 NC_003401.1 + 80324 0.67 0.700284
Target:  5'- gCUGGGCcaGGCcAAGGCgCGCCUauUGGg -3'
miRNA:   3'- gGGCCCG--CCGuUUUCG-GCGGGguACC- -5'
13263 3' -60 NC_003401.1 + 107741 0.67 0.700284
Target:  5'- cUCgGGGCGGCc-GAGCCGgaCCCGg-- -3'
miRNA:   3'- -GGgCCCGCCGuuUUCGGCg-GGGUacc -5'
13263 3' -60 NC_003401.1 + 79566 0.67 0.697349
Target:  5'- gCCGGG-GGCAaccacaacuGAAGCgGCCCgggagccaugcagaCGUGGu -3'
miRNA:   3'- gGGCCCgCCGU---------UUUCGgCGGG--------------GUACC- -5'
13263 3' -60 NC_003401.1 + 132223 0.67 0.690484
Target:  5'- gCCCGGcCGGC----GCCGCCgCcgGGc -3'
miRNA:   3'- -GGGCCcGCCGuuuuCGGCGGgGuaCC- -5'
13263 3' -60 NC_003401.1 + 115050 0.67 0.680637
Target:  5'- cCCCGGuGgGGUgcAAGUCcCCCgGUGGg -3'
miRNA:   3'- -GGGCC-CgCCGuuUUCGGcGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 115221 0.67 0.680637
Target:  5'- cCCCGGuGgGGUgcAAGUCcCCCgGUGGg -3'
miRNA:   3'- -GGGCC-CgCCGuuUUCGGcGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 114936 0.67 0.680637
Target:  5'- cCCCGGuGgGGUgcAAGUCcCCCgGUGGg -3'
miRNA:   3'- -GGGCC-CgCCGuuUUCGGcGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 114879 0.67 0.680637
Target:  5'- cCCCGGuGgGGUgcAAGUCcCCCgGUGGg -3'
miRNA:   3'- -GGGCC-CgCCGuuUUCGGcGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 105491 0.67 0.680637
Target:  5'- gCCaGGGUGGC---GGCCGUCaCC-UGGg -3'
miRNA:   3'- gGG-CCCGCCGuuuUCGGCGG-GGuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.