miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13263 5' -48.1 NC_003401.1 + 72962 0.66 0.999068
Target:  5'- aACCGUG-GCGCA-Cg---AGUGACCu -3'
miRNA:   3'- gUGGUACaCGUGUaGaaagUCACUGG- -5'
13263 5' -48.1 NC_003401.1 + 124081 0.66 0.999068
Target:  5'- cCugUuucUGUGCGCGUCguuuuugUUCAGcUGGCUg -3'
miRNA:   3'- -GugGu--ACACGUGUAGa------AAGUC-ACUGG- -5'
13263 5' -48.1 NC_003401.1 + 101776 0.66 0.998856
Target:  5'- aCGCCAguuuuuuuUGCGCAUCUgcgugcGUGGCCc -3'
miRNA:   3'- -GUGGUac------ACGUGUAGAaagu--CACUGG- -5'
13263 5' -48.1 NC_003401.1 + 21092 0.66 0.998308
Target:  5'- gACUuUGUGCACAcCUUg-GGUGACg -3'
miRNA:   3'- gUGGuACACGUGUaGAAagUCACUGg -5'
13263 5' -48.1 NC_003401.1 + 105360 0.66 0.998308
Target:  5'- cCGCCAggGUGggcCACAUgg--CGGUGACCa -3'
miRNA:   3'- -GUGGUa-CAC---GUGUAgaaaGUCACUGG- -5'
13263 5' -48.1 NC_003401.1 + 12307 0.67 0.99796
Target:  5'- gAUCAUGUcCACgAUCUcgCAGUuGACCg -3'
miRNA:   3'- gUGGUACAcGUG-UAGAaaGUCA-CUGG- -5'
13263 5' -48.1 NC_003401.1 + 100610 0.67 0.99796
Target:  5'- uGCCA-GUGUAUucucuGUCUggCGGUGACa -3'
miRNA:   3'- gUGGUaCACGUG-----UAGAaaGUCACUGg -5'
13263 5' -48.1 NC_003401.1 + 85822 0.68 0.992854
Target:  5'- uGCCAUGUcggGCGCGgaaugcuucacgccCUUUCGG-GACCg -3'
miRNA:   3'- gUGGUACA---CGUGUa-------------GAAAGUCaCUGG- -5'
13263 5' -48.1 NC_003401.1 + 19584 0.69 0.988505
Target:  5'- -uUCGUGUucGCGCcgCggUUCGGUGGCCc -3'
miRNA:   3'- guGGUACA--CGUGuaGa-AAGUCACUGG- -5'
13263 5' -48.1 NC_003401.1 + 118921 0.69 0.986897
Target:  5'- -cCCAUGUGCGCAUCcccccaucuuaUUUCcccGACCa -3'
miRNA:   3'- guGGUACACGUGUAG-----------AAAGucaCUGG- -5'
13263 5' -48.1 NC_003401.1 + 118004 0.74 0.901799
Target:  5'- gCACCGacgGUGCccguggugAUAUgUUUCAGUGACCc -3'
miRNA:   3'- -GUGGUa--CACG--------UGUAgAAAGUCACUGG- -5'
13263 5' -48.1 NC_003401.1 + 23394 0.75 0.864657
Target:  5'- gCGCgCGUG-GCaACAUCUUUCGGUGcCCu -3'
miRNA:   3'- -GUG-GUACaCG-UGUAGAAAGUCACuGG- -5'
13263 5' -48.1 NC_003401.1 + 118087 0.8 0.60255
Target:  5'- -cCCAUGaGUACAUgUUUCGGUGACCc -3'
miRNA:   3'- guGGUACaCGUGUAgAAAGUCACUGG- -5'
13263 5' -48.1 NC_003401.1 + 118158 1.12 0.009124
Target:  5'- gCACCAUGUGCACAUCUUUCAGUGACCc -3'
miRNA:   3'- -GUGGUACACGUGUAGAAAGUCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.