miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13265 5' -58.9 NC_003401.1 + 14196 0.67 0.728173
Target:  5'- -gGGaCCGGCC--GGGUGCGcgaaucgauuggccgCGCGGc -3'
miRNA:   3'- ggCC-GGCCGGuuUCCACGCua-------------GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 18409 0.68 0.692272
Target:  5'- cCCGGUCGGUUucccAGGG-GUGGUCucgGCGGa -3'
miRNA:   3'- -GGCCGGCCGGu---UUCCaCGCUAG---CGCC- -5'
13265 5' -58.9 NC_003401.1 + 132443 0.68 0.68244
Target:  5'- cCCGGCgcgcgGGCCcGGGGgGCGcgCGgGGg -3'
miRNA:   3'- -GGCCGg----CCGGuUUCCaCGCuaGCgCC- -5'
13265 5' -58.9 NC_003401.1 + 27890 0.68 0.672569
Target:  5'- gUCGGCguccugUGcGCCGGAGGUcuGCGA-CGCGGc -3'
miRNA:   3'- -GGCCG------GC-CGGUUUCCA--CGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 16652 0.68 0.662667
Target:  5'- uCCGGa-GGUCAAGGcUGCGG-CGCGGc -3'
miRNA:   3'- -GGCCggCCGGUUUCcACGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 42183 0.68 0.662667
Target:  5'- gCCuGCCGGcCCAgcGcGUGcCGGUCGCGu -3'
miRNA:   3'- -GGcCGGCC-GGUuuC-CAC-GCUAGCGCc -5'
13265 5' -58.9 NC_003401.1 + 72116 0.69 0.652741
Target:  5'- -aGGgCGGCCAGGGGUacgauaGCuGGUCGUGa -3'
miRNA:   3'- ggCCgGCCGGUUUCCA------CG-CUAGCGCc -5'
13265 5' -58.9 NC_003401.1 + 106898 0.69 0.6428
Target:  5'- uCUGGuuGGCgAGAGGcuacgccgGCGuUUGCGGg -3'
miRNA:   3'- -GGCCggCCGgUUUCCa-------CGCuAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 69476 0.69 0.622901
Target:  5'- aCGuGCCGGCaacuGGGGaacaUGCGAUaUGCGGg -3'
miRNA:   3'- gGC-CGGCCGgu--UUCC----ACGCUA-GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 118683 0.7 0.59312
Target:  5'- cCCGGUgGGCCAGGGGgccaGgGAcCGCaGGc -3'
miRNA:   3'- -GGCCGgCCGGUUUCCa---CgCUaGCG-CC- -5'
13265 5' -58.9 NC_003401.1 + 13674 0.7 0.583238
Target:  5'- cUCGGacaGGUCGcGGGccagGCGGUCGCGGu -3'
miRNA:   3'- -GGCCgg-CCGGUuUCCa---CGCUAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 119780 0.7 0.57339
Target:  5'- aCGGCCuccgccaaucuGGCCGGAGGcgGCGca-GCGGc -3'
miRNA:   3'- gGCCGG-----------CCGGUUUCCa-CGCuagCGCC- -5'
13265 5' -58.9 NC_003401.1 + 46422 0.7 0.56358
Target:  5'- uCCGGCacCGGCauc-GGUGCGGUgauUGCGGu -3'
miRNA:   3'- -GGCCG--GCCGguuuCCACGCUA---GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 49269 0.7 0.553816
Target:  5'- aCCGGCgGGUCAAAaacGGcagaaUGCGcagugGUCGCGGu -3'
miRNA:   3'- -GGCCGgCCGGUUU---CC-----ACGC-----UAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 118724 0.7 0.544103
Target:  5'- aCCGGCCGcGCCGcuug-GCGG-CGCGGc -3'
miRNA:   3'- -GGCCGGC-CGGUuuccaCGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 121029 0.71 0.534446
Target:  5'- aCgGGcCCGGCCGAGGGggGuCGAUCcUGGg -3'
miRNA:   3'- -GgCC-GGCCGGUUUCCa-C-GCUAGcGCC- -5'
13265 5' -58.9 NC_003401.1 + 119076 0.71 0.496478
Target:  5'- gCGGCCGGCacCGGcguuaaccGGGUGCGuUgGCGGc -3'
miRNA:   3'- gGCCGGCCG--GUU--------UCCACGCuAgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 72638 0.73 0.39101
Target:  5'- gCGGCCacGGCCAAGGccGUGAcgCGCGGg -3'
miRNA:   3'- gGCCGG--CCGGUUUCcaCGCUa-GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 118588 0.74 0.386129
Target:  5'- gCCGGCCGGCCucugcccggccaccGAGGaUGCGGUCaaUGGg -3'
miRNA:   3'- -GGCCGGCCGGu-------------UUCC-ACGCUAGc-GCC- -5'
13265 5' -58.9 NC_003401.1 + 106719 0.75 0.30127
Target:  5'- uCCGGUgaagaugaGGCCuGAGGUGCGGUUGaCGGu -3'
miRNA:   3'- -GGCCGg-------CCGGuUUCCACGCUAGC-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.