miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13267 3' -54 NC_003401.1 + 72360 0.66 0.951097
Target:  5'- uCCGGCCauagcccacagggGGUgAAccagguGCCACGGCGuCGg -3'
miRNA:   3'- -GGCCGG-------------CCAgUUuuu---CGGUGUCGU-GC- -5'
13267 3' -54 NC_003401.1 + 108129 0.66 0.942732
Target:  5'- -aGGCCGGUCGcgcAGUC-CGGCgACGc -3'
miRNA:   3'- ggCCGGCCAGUuuuUCGGuGUCG-UGC- -5'
13267 3' -54 NC_003401.1 + 126240 0.66 0.942732
Target:  5'- cCCGGgCGucaucuUCGAAAuccAGCCcCAGCACGu -3'
miRNA:   3'- -GGCCgGCc-----AGUUUU---UCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 118670 0.66 0.939908
Target:  5'- -gGGCCGuaugacccccgcaacG-CGAGGGGCCGCuGGCGCGg -3'
miRNA:   3'- ggCCGGC---------------CaGUUUUUCGGUG-UCGUGC- -5'
13267 3' -54 NC_003401.1 + 17690 0.66 0.937976
Target:  5'- aCGGUcagCGGgcgaGAGGAGUC-CAGCACGa -3'
miRNA:   3'- gGCCG---GCCag--UUUUUCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 15383 0.66 0.937976
Target:  5'- --aGCCGGUUAAAAAGuCCACcucgaAGuCGCGg -3'
miRNA:   3'- ggcCGGCCAGUUUUUC-GGUG-----UC-GUGC- -5'
13267 3' -54 NC_003401.1 + 8826 0.66 0.937487
Target:  5'- aCCGGUgUGG-CGAuugccgcGGAGCC-CAGCACGu -3'
miRNA:   3'- -GGCCG-GCCaGUU-------UUUCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 86803 0.67 0.932976
Target:  5'- uCCGGgacguUUGGgaUCAGGAAGCCACAuauacGCACa -3'
miRNA:   3'- -GGCC-----GGCC--AGUUUUUCGGUGU-----CGUGc -5'
13267 3' -54 NC_003401.1 + 109201 0.67 0.932976
Target:  5'- aUCGGCCGGUCGuuguuAGAGGCgUAC-GCGUGg -3'
miRNA:   3'- -GGCCGGCCAGU-----UUUUCG-GUGuCGUGC- -5'
13267 3' -54 NC_003401.1 + 132366 0.67 0.926649
Target:  5'- gCCGGCCGGgcgccuccGGGCC-CGGC-CGc -3'
miRNA:   3'- -GGCCGGCCaguuu---UUCGGuGUCGuGC- -5'
13267 3' -54 NC_003401.1 + 42341 0.67 0.922234
Target:  5'- uCCGcGCCGGgguUCAucu-GCCACgcaaAGCACa -3'
miRNA:   3'- -GGC-CGGCC---AGUuuuuCGGUG----UCGUGc -5'
13267 3' -54 NC_003401.1 + 118122 0.67 0.916492
Target:  5'- cCCGGgCGG-C-AAAAGCCGCcccaugGGCACc -3'
miRNA:   3'- -GGCCgGCCaGuUUUUCGGUG------UCGUGc -5'
13267 3' -54 NC_003401.1 + 75421 0.67 0.915905
Target:  5'- gCCGGCCaGUaCAAAcgaugccucgaacGAGCC-CAGCAgCGu -3'
miRNA:   3'- -GGCCGGcCA-GUUU-------------UUCGGuGUCGU-GC- -5'
13267 3' -54 NC_003401.1 + 27811 0.67 0.910505
Target:  5'- gCGGCUGGUacgcuAGgUACGGCGCa -3'
miRNA:   3'- gGCCGGCCAguuuuUCgGUGUCGUGc -5'
13267 3' -54 NC_003401.1 + 51066 0.67 0.910505
Target:  5'- gCCGGaaucgcgcCCGGUUAGAGAcuGuCCGCAGC-CGg -3'
miRNA:   3'- -GGCC--------GGCCAGUUUUU--C-GGUGUCGuGC- -5'
13267 3' -54 NC_003401.1 + 11251 0.67 0.904274
Target:  5'- uCCGGCCGccUCGAAAcacugGGCC--AGCGCGa -3'
miRNA:   3'- -GGCCGGCc-AGUUUU-----UCGGugUCGUGC- -5'
13267 3' -54 NC_003401.1 + 118618 0.67 0.904274
Target:  5'- gCCGGUCGGUgaaCGGGAGGCgCGCcGCuuGCGu -3'
miRNA:   3'- -GGCCGGCCA---GUUUUUCG-GUGuCG--UGC- -5'
13267 3' -54 NC_003401.1 + 109019 0.67 0.904274
Target:  5'- gCGGUuuccccUGGUUAccuguuuGCCACAGCACGc -3'
miRNA:   3'- gGCCG------GCCAGUuuuu---CGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 132515 0.68 0.8978
Target:  5'- gCGGCCGGgggCGGc-GGCCGCgGGCcCGg -3'
miRNA:   3'- gGCCGGCCa--GUUuuUCGGUG-UCGuGC- -5'
13267 3' -54 NC_003401.1 + 88971 0.68 0.891088
Target:  5'- aCCGGCC-GUCu---GGCCugAGgGCa -3'
miRNA:   3'- -GGCCGGcCAGuuuuUCGGugUCgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.