miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13267 3' -54 NC_003401.1 + 119528 1.12 0.002715
Target:  5'- gCCGGCCGGUCAAAAAGCCACAGCACGg -3'
miRNA:   3'- -GGCCGGCCAGUUUUUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 122534 0.79 0.349391
Target:  5'- gCCGGCgacaaGGUaAGGGGGCCGCGGCGCGc -3'
miRNA:   3'- -GGCCGg----CCAgUUUUUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 16652 0.76 0.491287
Target:  5'- uCCGGa-GGUCAA--GGCUGCGGCGCGg -3'
miRNA:   3'- -GGCCggCCAGUUuuUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 106844 0.75 0.51091
Target:  5'- gCCaGCC-GUCGAAgaGAGCCACGGCGCc -3'
miRNA:   3'- -GGcCGGcCAGUUU--UUCGGUGUCGUGc -5'
13267 3' -54 NC_003401.1 + 11891 0.75 0.536889
Target:  5'- aCCGGCaagcaagaGGUCAuccgaccgguGCCGCAGUACGa -3'
miRNA:   3'- -GGCCGg-------CCAGUuuuu------CGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 96716 0.75 0.51091
Target:  5'- gCCGGUCGGgccguugguUCAAAcGGuCCACAGUACGu -3'
miRNA:   3'- -GGCCGGCC---------AGUUUuUC-GGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 14810 0.74 0.602497
Target:  5'- ---uCUGGUCGAGAAGCCGCacgcGGCACGg -3'
miRNA:   3'- ggccGGCCAGUUUUUCGGUG----UCGUGC- -5'
13267 3' -54 NC_003401.1 + 132224 0.73 0.644087
Target:  5'- cCCGGCCGGcgccgcCGccGGGCCGCGGC-CGc -3'
miRNA:   3'- -GGCCGGCCa-----GUuuUUCGGUGUCGuGC- -5'
13267 3' -54 NC_003401.1 + 14193 0.73 0.644087
Target:  5'- aCCGGCCGGgugcgcgaaUCGAuuGGCCgcGCGGCucugGCGg -3'
miRNA:   3'- -GGCCGGCC---------AGUUuuUCGG--UGUCG----UGC- -5'
13267 3' -54 NC_003401.1 + 24769 0.73 0.654481
Target:  5'- gCgGGCUaGGaacAAAAGCCGCAGCGCGg -3'
miRNA:   3'- -GgCCGG-CCaguUUUUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 32841 0.72 0.705993
Target:  5'- aCCGGCaCGGUaacc-GGCCugGGUACa -3'
miRNA:   3'- -GGCCG-GCCAguuuuUCGGugUCGUGc -5'
13267 3' -54 NC_003401.1 + 132534 0.72 0.662783
Target:  5'- cCCGGgcCCGGggccccacAAGCCGCGGCGCGc -3'
miRNA:   3'- -GGCC--GGCCaguuu---UUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 123340 0.72 0.664856
Target:  5'- aCGuGCCuGGUCAcucauauaggcGGuuuGGCCGCGGCGCGg -3'
miRNA:   3'- gGC-CGG-CCAGU-----------UUu--UCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 23539 0.71 0.765566
Target:  5'- -aGGCCGGUgguggcgcuggCGAAGauaguGGCCGCAgaGCACGg -3'
miRNA:   3'- ggCCGGCCA-----------GUUUU-----UCGGUGU--CGUGC- -5'
13267 3' -54 NC_003401.1 + 49269 0.71 0.726212
Target:  5'- aCCGGCgGGUCAAAAacGGCagaaugCGCAGUggucGCGg -3'
miRNA:   3'- -GGCCGgCCAGUUUU--UCG------GUGUCG----UGC- -5'
13267 3' -54 NC_003401.1 + 122572 0.71 0.765566
Target:  5'- gCCGcGCCGGU----GAGCCGCGGCcCu -3'
miRNA:   3'- -GGC-CGGCCAguuuUUCGGUGUCGuGc -5'
13267 3' -54 NC_003401.1 + 8750 0.71 0.736201
Target:  5'- gUCaGCCGGUCGcc--GCCACAGgGCGc -3'
miRNA:   3'- -GGcCGGCCAGUuuuuCGGUGUCgUGC- -5'
13267 3' -54 NC_003401.1 + 55989 0.7 0.784546
Target:  5'- -aGGCUGGUCAuuguuGUCGCGuGCACGc -3'
miRNA:   3'- ggCCGGCCAGUuuuu-CGGUGU-CGUGC- -5'
13267 3' -54 NC_003401.1 + 119794 0.7 0.793828
Target:  5'- uCUGGCCGGaggCGGcgcagcggcaccGAGGCUaaACAGCGCGc -3'
miRNA:   3'- -GGCCGGCCa--GUU------------UUUCGG--UGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 36907 0.7 0.78361
Target:  5'- aCGGCCGGUCccGGAAGUCcaccauuGCGGCAa- -3'
miRNA:   3'- gGCCGGCCAGu-UUUUCGG-------UGUCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.