miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13267 3' -54 NC_003401.1 + 132472 0.7 0.820735
Target:  5'- -gGGCCGGgagCcggGGGAGGCCGgCGGCGCc -3'
miRNA:   3'- ggCCGGCCa--G---UUUUUCGGU-GUCGUGc -5'
13267 3' -54 NC_003401.1 + 41929 0.7 0.775122
Target:  5'- -gGGCCGuuguacGUCAG--GGCCAgGGCACGu -3'
miRNA:   3'- ggCCGGC------CAGUUuuUCGGUgUCGUGC- -5'
13267 3' -54 NC_003401.1 + 126797 0.7 0.788276
Target:  5'- gUCGGUCGGUUGGAAcccggaggacgaccaGGCCuggcuccuGCAGCACa -3'
miRNA:   3'- -GGCCGGCCAGUUUU---------------UCGG--------UGUCGUGc -5'
13267 3' -54 NC_003401.1 + 132750 0.7 0.80296
Target:  5'- -aGGCCGG-CGGAGGaccGCCAUgccgGGCGCGg -3'
miRNA:   3'- ggCCGGCCaGUUUUU---CGGUG----UCGUGC- -5'
13267 3' -54 NC_003401.1 + 11178 0.7 0.811932
Target:  5'- -gGGCCGGUUAucAGGCCguaaaacuGCAGCGUGa -3'
miRNA:   3'- ggCCGGCCAGUuuUUCGG--------UGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 23957 0.69 0.857256
Target:  5'- gCCGcGCCGGUUucauauauccGCCAacCGGCGCGg -3'
miRNA:   3'- -GGC-CGGCCAGuuuuu-----CGGU--GUCGUGC- -5'
13267 3' -54 NC_003401.1 + 21623 0.69 0.861934
Target:  5'- gCGGCaCGcGcagCGGAcGGCCGCGGCACc -3'
miRNA:   3'- gGCCG-GC-Ca--GUUUuUCGGUGUCGUGc -5'
13267 3' -54 NC_003401.1 + 83221 0.69 0.842773
Target:  5'- aCCGGCCGcUCcauauccucGCCGCGuGCACGg -3'
miRNA:   3'- -GGCCGGCcAGuuuuu----CGGUGU-CGUGC- -5'
13267 3' -54 NC_003401.1 + 118683 0.68 0.869558
Target:  5'- cCCGGUgGGcCAGGGGGCCAgGGacCGCa -3'
miRNA:   3'- -GGCCGgCCaGUUUUUCGGUgUC--GUGc -5'
13267 3' -54 NC_003401.1 + 30807 0.68 0.876962
Target:  5'- uCCGGugacaguaguaCCcGUUGAGGAGgCACAGCGCGg -3'
miRNA:   3'- -GGCC-----------GGcCAGUUUUUCgGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 118446 0.68 0.876962
Target:  5'- gCCGGCCGGcCAAAGGuGCgAUcGCGgGg -3'
miRNA:   3'- -GGCCGGCCaGUUUUU-CGgUGuCGUgC- -5'
13267 3' -54 NC_003401.1 + 132668 0.68 0.883433
Target:  5'- -gGGCCGGggcccggggcgccUCGGcGGGGCC-CGGCGCGg -3'
miRNA:   3'- ggCCGGCC-------------AGUU-UUUCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 101587 0.68 0.884141
Target:  5'- aCCGGUgucUGGcgUCAauGAGGGCCAC-GCACGc -3'
miRNA:   3'- -GGCCG---GCC--AGU--UUUUCGGUGuCGUGC- -5'
13267 3' -54 NC_003401.1 + 132493 0.68 0.891088
Target:  5'- cCCGGuCCGGcCG---AGCCcgGCGGCGCc -3'
miRNA:   3'- -GGCC-GGCCaGUuuuUCGG--UGUCGUGc -5'
13267 3' -54 NC_003401.1 + 132417 0.68 0.891088
Target:  5'- -gGGCCGGgggucccgCGGGGGGCCGgGGC-CGc -3'
miRNA:   3'- ggCCGGCCa-------GUUUUUCGGUgUCGuGC- -5'
13267 3' -54 NC_003401.1 + 88971 0.68 0.891088
Target:  5'- aCCGGCC-GUCu---GGCCugAGgGCa -3'
miRNA:   3'- -GGCCGGcCAGuuuuUCGGugUCgUGc -5'
13267 3' -54 NC_003401.1 + 126315 0.68 0.884141
Target:  5'- cCUGGCCGGUaaccGAGGCCuACAGauuCGCa -3'
miRNA:   3'- -GGCCGGCCAguu-UUUCGG-UGUC---GUGc -5'
13267 3' -54 NC_003401.1 + 120867 0.68 0.884141
Target:  5'- aCCGGCCGGcugcCAAGAA-CCAgUGGCGCu -3'
miRNA:   3'- -GGCCGGCCa---GUUUUUcGGU-GUCGUGc -5'
13267 3' -54 NC_003401.1 + 132515 0.68 0.8978
Target:  5'- gCGGCCGGgggCGGc-GGCCGCgGGCcCGg -3'
miRNA:   3'- gGCCGGCCa--GUUuuUCGGUG-UCGuGC- -5'
13267 3' -54 NC_003401.1 + 27811 0.67 0.910505
Target:  5'- gCGGCUGGUacgcuAGgUACGGCGCa -3'
miRNA:   3'- gGCCGGCCAguuuuUCgGUGUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.