miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13267 3' -54 NC_003401.1 + 8750 0.71 0.736201
Target:  5'- gUCaGCCGGUCGcc--GCCACAGgGCGc -3'
miRNA:   3'- -GGcCGGCCAGUuuuuCGGUGUCgUGC- -5'
13267 3' -54 NC_003401.1 + 8826 0.66 0.937487
Target:  5'- aCCGGUgUGG-CGAuugccgcGGAGCC-CAGCACGu -3'
miRNA:   3'- -GGCCG-GCCaGUU-------UUUCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 11178 0.7 0.811932
Target:  5'- -gGGCCGGUUAucAGGCCguaaaacuGCAGCGUGa -3'
miRNA:   3'- ggCCGGCCAGUuuUUCGG--------UGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 11251 0.67 0.904274
Target:  5'- uCCGGCCGccUCGAAAcacugGGCC--AGCGCGa -3'
miRNA:   3'- -GGCCGGCc-AGUUUU-----UCGGugUCGUGC- -5'
13267 3' -54 NC_003401.1 + 11891 0.75 0.536889
Target:  5'- aCCGGCaagcaagaGGUCAuccgaccgguGCCGCAGUACGa -3'
miRNA:   3'- -GGCCGg-------CCAGUuuuu------CGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 14193 0.73 0.644087
Target:  5'- aCCGGCCGGgugcgcgaaUCGAuuGGCCgcGCGGCucugGCGg -3'
miRNA:   3'- -GGCCGGCC---------AGUUuuUCGG--UGUCG----UGC- -5'
13267 3' -54 NC_003401.1 + 14810 0.74 0.602497
Target:  5'- ---uCUGGUCGAGAAGCCGCacgcGGCACGg -3'
miRNA:   3'- ggccGGCCAGUUUUUCGGUG----UCGUGC- -5'
13267 3' -54 NC_003401.1 + 15383 0.66 0.937976
Target:  5'- --aGCCGGUUAAAAAGuCCACcucgaAGuCGCGg -3'
miRNA:   3'- ggcCGGCCAGUUUUUC-GGUG-----UC-GUGC- -5'
13267 3' -54 NC_003401.1 + 16652 0.76 0.491287
Target:  5'- uCCGGa-GGUCAA--GGCUGCGGCGCGg -3'
miRNA:   3'- -GGCCggCCAGUUuuUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 17690 0.66 0.937976
Target:  5'- aCGGUcagCGGgcgaGAGGAGUC-CAGCACGa -3'
miRNA:   3'- gGCCG---GCCag--UUUUUCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 21623 0.69 0.861934
Target:  5'- gCGGCaCGcGcagCGGAcGGCCGCGGCACc -3'
miRNA:   3'- gGCCG-GC-Ca--GUUUuUCGGUGUCGUGc -5'
13267 3' -54 NC_003401.1 + 23539 0.71 0.765566
Target:  5'- -aGGCCGGUgguggcgcuggCGAAGauaguGGCCGCAgaGCACGg -3'
miRNA:   3'- ggCCGGCCA-----------GUUUU-----UCGGUGU--CGUGC- -5'
13267 3' -54 NC_003401.1 + 23957 0.69 0.857256
Target:  5'- gCCGcGCCGGUUucauauauccGCCAacCGGCGCGg -3'
miRNA:   3'- -GGC-CGGCCAGuuuuu-----CGGU--GUCGUGC- -5'
13267 3' -54 NC_003401.1 + 24769 0.73 0.654481
Target:  5'- gCgGGCUaGGaacAAAAGCCGCAGCGCGg -3'
miRNA:   3'- -GgCCGG-CCaguUUUUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 27811 0.67 0.910505
Target:  5'- gCGGCUGGUacgcuAGgUACGGCGCa -3'
miRNA:   3'- gGCCGGCCAguuuuUCgGUGUCGUGc -5'
13267 3' -54 NC_003401.1 + 30807 0.68 0.876962
Target:  5'- uCCGGugacaguaguaCCcGUUGAGGAGgCACAGCGCGg -3'
miRNA:   3'- -GGCC-----------GGcCAGUUUUUCgGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 32841 0.72 0.705993
Target:  5'- aCCGGCaCGGUaacc-GGCCugGGUACa -3'
miRNA:   3'- -GGCCG-GCCAguuuuUCGGugUCGUGc -5'
13267 3' -54 NC_003401.1 + 36907 0.7 0.78361
Target:  5'- aCGGCCGGUCccGGAAGUCcaccauuGCGGCAa- -3'
miRNA:   3'- gGCCGGCCAGu-UUUUCGG-------UGUCGUgc -5'
13267 3' -54 NC_003401.1 + 41929 0.7 0.775122
Target:  5'- -gGGCCGuuguacGUCAG--GGCCAgGGCACGu -3'
miRNA:   3'- ggCCGGC------CAGUUuuUCGGUgUCGUGC- -5'
13267 3' -54 NC_003401.1 + 42341 0.67 0.922234
Target:  5'- uCCGcGCCGGgguUCAucu-GCCACgcaaAGCACa -3'
miRNA:   3'- -GGC-CGGCC---AGUuuuuCGGUG----UCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.