miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13267 3' -54 NC_003401.1 + 49269 0.71 0.726212
Target:  5'- aCCGGCgGGUCAAAAacGGCagaaugCGCAGUggucGCGg -3'
miRNA:   3'- -GGCCGgCCAGUUUU--UCG------GUGUCG----UGC- -5'
13267 3' -54 NC_003401.1 + 51066 0.67 0.910505
Target:  5'- gCCGGaaucgcgcCCGGUUAGAGAcuGuCCGCAGC-CGg -3'
miRNA:   3'- -GGCC--------GGCCAGUUUUU--C-GGUGUCGuGC- -5'
13267 3' -54 NC_003401.1 + 55989 0.7 0.784546
Target:  5'- -aGGCUGGUCAuuguuGUCGCGuGCACGc -3'
miRNA:   3'- ggCCGGCCAGUuuuu-CGGUGU-CGUGC- -5'
13267 3' -54 NC_003401.1 + 72360 0.66 0.951097
Target:  5'- uCCGGCCauagcccacagggGGUgAAccagguGCCACGGCGuCGg -3'
miRNA:   3'- -GGCCGG-------------CCAgUUuuu---CGGUGUCGU-GC- -5'
13267 3' -54 NC_003401.1 + 75421 0.67 0.915905
Target:  5'- gCCGGCCaGUaCAAAcgaugccucgaacGAGCC-CAGCAgCGu -3'
miRNA:   3'- -GGCCGGcCA-GUUU-------------UUCGGuGUCGU-GC- -5'
13267 3' -54 NC_003401.1 + 83221 0.69 0.842773
Target:  5'- aCCGGCCGcUCcauauccucGCCGCGuGCACGg -3'
miRNA:   3'- -GGCCGGCcAGuuuuu----CGGUGU-CGUGC- -5'
13267 3' -54 NC_003401.1 + 86803 0.67 0.932976
Target:  5'- uCCGGgacguUUGGgaUCAGGAAGCCACAuauacGCACa -3'
miRNA:   3'- -GGCC-----GGCC--AGUUUUUCGGUGU-----CGUGc -5'
13267 3' -54 NC_003401.1 + 88971 0.68 0.891088
Target:  5'- aCCGGCC-GUCu---GGCCugAGgGCa -3'
miRNA:   3'- -GGCCGGcCAGuuuuUCGGugUCgUGc -5'
13267 3' -54 NC_003401.1 + 96716 0.75 0.51091
Target:  5'- gCCGGUCGGgccguugguUCAAAcGGuCCACAGUACGu -3'
miRNA:   3'- -GGCCGGCC---------AGUUUuUC-GGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 101587 0.68 0.884141
Target:  5'- aCCGGUgucUGGcgUCAauGAGGGCCAC-GCACGc -3'
miRNA:   3'- -GGCCG---GCC--AGU--UUUUCGGUGuCGUGC- -5'
13267 3' -54 NC_003401.1 + 106844 0.75 0.51091
Target:  5'- gCCaGCC-GUCGAAgaGAGCCACGGCGCc -3'
miRNA:   3'- -GGcCGGcCAGUUU--UUCGGUGUCGUGc -5'
13267 3' -54 NC_003401.1 + 108129 0.66 0.942732
Target:  5'- -aGGCCGGUCGcgcAGUC-CGGCgACGc -3'
miRNA:   3'- ggCCGGCCAGUuuuUCGGuGUCG-UGC- -5'
13267 3' -54 NC_003401.1 + 109019 0.67 0.904274
Target:  5'- gCGGUuuccccUGGUUAccuguuuGCCACAGCACGc -3'
miRNA:   3'- gGCCG------GCCAGUuuuu---CGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 109201 0.67 0.932976
Target:  5'- aUCGGCCGGUCGuuguuAGAGGCgUAC-GCGUGg -3'
miRNA:   3'- -GGCCGGCCAGU-----UUUUCG-GUGuCGUGC- -5'
13267 3' -54 NC_003401.1 + 118122 0.67 0.916492
Target:  5'- cCCGGgCGG-C-AAAAGCCGCcccaugGGCACc -3'
miRNA:   3'- -GGCCgGCCaGuUUUUCGGUG------UCGUGc -5'
13267 3' -54 NC_003401.1 + 118446 0.68 0.876962
Target:  5'- gCCGGCCGGcCAAAGGuGCgAUcGCGgGg -3'
miRNA:   3'- -GGCCGGCCaGUUUUU-CGgUGuCGUgC- -5'
13267 3' -54 NC_003401.1 + 118618 0.67 0.904274
Target:  5'- gCCGGUCGGUgaaCGGGAGGCgCGCcGCuuGCGu -3'
miRNA:   3'- -GGCCGGCCA---GUUUUUCG-GUGuCG--UGC- -5'
13267 3' -54 NC_003401.1 + 118670 0.66 0.939908
Target:  5'- -gGGCCGuaugacccccgcaacG-CGAGGGGCCGCuGGCGCGg -3'
miRNA:   3'- ggCCGGC---------------CaGUUUUUCGGUG-UCGUGC- -5'
13267 3' -54 NC_003401.1 + 118683 0.68 0.869558
Target:  5'- cCCGGUgGGcCAGGGGGCCAgGGacCGCa -3'
miRNA:   3'- -GGCCGgCCaGUUUUUCGGUgUC--GUGc -5'
13267 3' -54 NC_003401.1 + 119528 1.12 0.002715
Target:  5'- gCCGGCCGGUCAAAAAGCCACAGCACGg -3'
miRNA:   3'- -GGCCGGCCAGUUUUUCGGUGUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.