miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13267 3' -54 NC_003401.1 + 119794 0.7 0.793828
Target:  5'- uCUGGCCGGaggCGGcgcagcggcaccGAGGCUaaACAGCGCGc -3'
miRNA:   3'- -GGCCGGCCa--GUU------------UUUCGG--UGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 120867 0.68 0.884141
Target:  5'- aCCGGCCGGcugcCAAGAA-CCAgUGGCGCu -3'
miRNA:   3'- -GGCCGGCCa---GUUUUUcGGU-GUCGUGc -5'
13267 3' -54 NC_003401.1 + 122534 0.79 0.349391
Target:  5'- gCCGGCgacaaGGUaAGGGGGCCGCGGCGCGc -3'
miRNA:   3'- -GGCCGg----CCAgUUUUUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 122572 0.71 0.765566
Target:  5'- gCCGcGCCGGU----GAGCCGCGGCcCu -3'
miRNA:   3'- -GGC-CGGCCAguuuUUCGGUGUCGuGc -5'
13267 3' -54 NC_003401.1 + 123340 0.72 0.664856
Target:  5'- aCGuGCCuGGUCAcucauauaggcGGuuuGGCCGCGGCGCGg -3'
miRNA:   3'- gGC-CGG-CCAGU-----------UUu--UCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 126240 0.66 0.942732
Target:  5'- cCCGGgCGucaucuUCGAAAuccAGCCcCAGCACGu -3'
miRNA:   3'- -GGCCgGCc-----AGUUUU---UCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 126315 0.68 0.884141
Target:  5'- cCUGGCCGGUaaccGAGGCCuACAGauuCGCa -3'
miRNA:   3'- -GGCCGGCCAguu-UUUCGG-UGUC---GUGc -5'
13267 3' -54 NC_003401.1 + 126797 0.7 0.788276
Target:  5'- gUCGGUCGGUUGGAAcccggaggacgaccaGGCCuggcuccuGCAGCACa -3'
miRNA:   3'- -GGCCGGCCAGUUUU---------------UCGG--------UGUCGUGc -5'
13267 3' -54 NC_003401.1 + 132224 0.73 0.644087
Target:  5'- cCCGGCCGGcgccgcCGccGGGCCGCGGC-CGc -3'
miRNA:   3'- -GGCCGGCCa-----GUuuUUCGGUGUCGuGC- -5'
13267 3' -54 NC_003401.1 + 132366 0.67 0.926649
Target:  5'- gCCGGCCGGgcgccuccGGGCC-CGGC-CGc -3'
miRNA:   3'- -GGCCGGCCaguuu---UUCGGuGUCGuGC- -5'
13267 3' -54 NC_003401.1 + 132417 0.68 0.891088
Target:  5'- -gGGCCGGgggucccgCGGGGGGCCGgGGC-CGc -3'
miRNA:   3'- ggCCGGCCa-------GUUUUUCGGUgUCGuGC- -5'
13267 3' -54 NC_003401.1 + 132472 0.7 0.820735
Target:  5'- -gGGCCGGgagCcggGGGAGGCCGgCGGCGCc -3'
miRNA:   3'- ggCCGGCCa--G---UUUUUCGGU-GUCGUGc -5'
13267 3' -54 NC_003401.1 + 132493 0.68 0.891088
Target:  5'- cCCGGuCCGGcCG---AGCCcgGCGGCGCc -3'
miRNA:   3'- -GGCC-GGCCaGUuuuUCGG--UGUCGUGc -5'
13267 3' -54 NC_003401.1 + 132515 0.68 0.8978
Target:  5'- gCGGCCGGgggCGGc-GGCCGCgGGCcCGg -3'
miRNA:   3'- gGCCGGCCa--GUUuuUCGGUG-UCGuGC- -5'
13267 3' -54 NC_003401.1 + 132534 0.72 0.662783
Target:  5'- cCCGGgcCCGGggccccacAAGCCGCGGCGCGc -3'
miRNA:   3'- -GGCC--GGCCaguuu---UUCGGUGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 132668 0.68 0.883433
Target:  5'- -gGGCCGGggcccggggcgccUCGGcGGGGCC-CGGCGCGg -3'
miRNA:   3'- ggCCGGCC-------------AGUU-UUUCGGuGUCGUGC- -5'
13267 3' -54 NC_003401.1 + 132750 0.7 0.80296
Target:  5'- -aGGCCGG-CGGAGGaccGCCAUgccgGGCGCGg -3'
miRNA:   3'- ggCCGGCCaGUUUUU---CGGUG----UCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.