Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13267 | 3' | -54 | NC_003401.1 | + | 118618 | 0.67 | 0.904274 |
Target: 5'- gCCGGUCGGUgaaCGGGAGGCgCGCcGCuuGCGu -3' miRNA: 3'- -GGCCGGCCA---GUUUUUCG-GUGuCG--UGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 118446 | 0.68 | 0.876962 |
Target: 5'- gCCGGCCGGcCAAAGGuGCgAUcGCGgGg -3' miRNA: 3'- -GGCCGGCCaGUUUUU-CGgUGuCGUgC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 118122 | 0.67 | 0.916492 |
Target: 5'- cCCGGgCGG-C-AAAAGCCGCcccaugGGCACc -3' miRNA: 3'- -GGCCgGCCaGuUUUUCGGUG------UCGUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 109201 | 0.67 | 0.932976 |
Target: 5'- aUCGGCCGGUCGuuguuAGAGGCgUAC-GCGUGg -3' miRNA: 3'- -GGCCGGCCAGU-----UUUUCG-GUGuCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 109019 | 0.67 | 0.904274 |
Target: 5'- gCGGUuuccccUGGUUAccuguuuGCCACAGCACGc -3' miRNA: 3'- gGCCG------GCCAGUuuuu---CGGUGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 108129 | 0.66 | 0.942732 |
Target: 5'- -aGGCCGGUCGcgcAGUC-CGGCgACGc -3' miRNA: 3'- ggCCGGCCAGUuuuUCGGuGUCG-UGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 106844 | 0.75 | 0.51091 |
Target: 5'- gCCaGCC-GUCGAAgaGAGCCACGGCGCc -3' miRNA: 3'- -GGcCGGcCAGUUU--UUCGGUGUCGUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 101587 | 0.68 | 0.884141 |
Target: 5'- aCCGGUgucUGGcgUCAauGAGGGCCAC-GCACGc -3' miRNA: 3'- -GGCCG---GCC--AGU--UUUUCGGUGuCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 96716 | 0.75 | 0.51091 |
Target: 5'- gCCGGUCGGgccguugguUCAAAcGGuCCACAGUACGu -3' miRNA: 3'- -GGCCGGCC---------AGUUUuUC-GGUGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 88971 | 0.68 | 0.891088 |
Target: 5'- aCCGGCC-GUCu---GGCCugAGgGCa -3' miRNA: 3'- -GGCCGGcCAGuuuuUCGGugUCgUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 86803 | 0.67 | 0.932976 |
Target: 5'- uCCGGgacguUUGGgaUCAGGAAGCCACAuauacGCACa -3' miRNA: 3'- -GGCC-----GGCC--AGUUUUUCGGUGU-----CGUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 83221 | 0.69 | 0.842773 |
Target: 5'- aCCGGCCGcUCcauauccucGCCGCGuGCACGg -3' miRNA: 3'- -GGCCGGCcAGuuuuu----CGGUGU-CGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 75421 | 0.67 | 0.915905 |
Target: 5'- gCCGGCCaGUaCAAAcgaugccucgaacGAGCC-CAGCAgCGu -3' miRNA: 3'- -GGCCGGcCA-GUUU-------------UUCGGuGUCGU-GC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 72360 | 0.66 | 0.951097 |
Target: 5'- uCCGGCCauagcccacagggGGUgAAccagguGCCACGGCGuCGg -3' miRNA: 3'- -GGCCGG-------------CCAgUUuuu---CGGUGUCGU-GC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 55989 | 0.7 | 0.784546 |
Target: 5'- -aGGCUGGUCAuuguuGUCGCGuGCACGc -3' miRNA: 3'- ggCCGGCCAGUuuuu-CGGUGU-CGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 51066 | 0.67 | 0.910505 |
Target: 5'- gCCGGaaucgcgcCCGGUUAGAGAcuGuCCGCAGC-CGg -3' miRNA: 3'- -GGCC--------GGCCAGUUUUU--C-GGUGUCGuGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 49269 | 0.71 | 0.726212 |
Target: 5'- aCCGGCgGGUCAAAAacGGCagaaugCGCAGUggucGCGg -3' miRNA: 3'- -GGCCGgCCAGUUUU--UCG------GUGUCG----UGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 42341 | 0.67 | 0.922234 |
Target: 5'- uCCGcGCCGGgguUCAucu-GCCACgcaaAGCACa -3' miRNA: 3'- -GGC-CGGCC---AGUuuuuCGGUG----UCGUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 41929 | 0.7 | 0.775122 |
Target: 5'- -gGGCCGuuguacGUCAG--GGCCAgGGCACGu -3' miRNA: 3'- ggCCGGC------CAGUUuuUCGGUgUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 36907 | 0.7 | 0.78361 |
Target: 5'- aCGGCCGGUCccGGAAGUCcaccauuGCGGCAa- -3' miRNA: 3'- gGCCGGCCAGu-UUUUCGG-------UGUCGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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