Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13267 | 3' | -54 | NC_003401.1 | + | 132224 | 0.73 | 0.644087 |
Target: 5'- cCCGGCCGGcgccgcCGccGGGCCGCGGC-CGc -3' miRNA: 3'- -GGCCGGCCa-----GUuuUUCGGUGUCGuGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 132534 | 0.72 | 0.662783 |
Target: 5'- cCCGGgcCCGGggccccacAAGCCGCGGCGCGc -3' miRNA: 3'- -GGCC--GGCCaguuu---UUCGGUGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 123340 | 0.72 | 0.664856 |
Target: 5'- aCGuGCCuGGUCAcucauauaggcGGuuuGGCCGCGGCGCGg -3' miRNA: 3'- gGC-CGG-CCAGU-----------UUu--UCGGUGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 8750 | 0.71 | 0.736201 |
Target: 5'- gUCaGCCGGUCGcc--GCCACAGgGCGc -3' miRNA: 3'- -GGcCGGCCAGUuuuuCGGUGUCgUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 119794 | 0.7 | 0.793828 |
Target: 5'- uCUGGCCGGaggCGGcgcagcggcaccGAGGCUaaACAGCGCGc -3' miRNA: 3'- -GGCCGGCCa--GUU------------UUUCGG--UGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 55989 | 0.7 | 0.784546 |
Target: 5'- -aGGCUGGUCAuuguuGUCGCGuGCACGc -3' miRNA: 3'- ggCCGGCCAGUuuuu-CGGUGU-CGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 36907 | 0.7 | 0.78361 |
Target: 5'- aCGGCCGGUCccGGAAGUCcaccauuGCGGCAa- -3' miRNA: 3'- gGCCGGCCAGu-UUUUCGG-------UGUCGUgc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 122572 | 0.71 | 0.765566 |
Target: 5'- gCCGcGCCGGU----GAGCCGCGGCcCu -3' miRNA: 3'- -GGC-CGGCCAguuuUUCGGUGUCGuGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 23539 | 0.71 | 0.765566 |
Target: 5'- -aGGCCGGUgguggcgcuggCGAAGauaguGGCCGCAgaGCACGg -3' miRNA: 3'- ggCCGGCCA-----------GUUUU-----UCGGUGU--CGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 11178 | 0.7 | 0.811932 |
Target: 5'- -gGGCCGGUUAucAGGCCguaaaacuGCAGCGUGa -3' miRNA: 3'- ggCCGGCCAGUuuUUCGG--------UGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 132750 | 0.7 | 0.80296 |
Target: 5'- -aGGCCGG-CGGAGGaccGCCAUgccgGGCGCGg -3' miRNA: 3'- ggCCGGCCaGUUUUU---CGGUG----UCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 126797 | 0.7 | 0.788276 |
Target: 5'- gUCGGUCGGUUGGAAcccggaggacgaccaGGCCuggcuccuGCAGCACa -3' miRNA: 3'- -GGCCGGCCAGUUUU---------------UCGG--------UGUCGUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 41929 | 0.7 | 0.775122 |
Target: 5'- -gGGCCGuuguacGUCAG--GGCCAgGGCACGu -3' miRNA: 3'- ggCCGGC------CAGUUuuUCGGUgUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 49269 | 0.71 | 0.726212 |
Target: 5'- aCCGGCgGGUCAAAAacGGCagaaugCGCAGUggucGCGg -3' miRNA: 3'- -GGCCGgCCAGUUUU--UCG------GUGUCG----UGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 32841 | 0.72 | 0.705993 |
Target: 5'- aCCGGCaCGGUaacc-GGCCugGGUACa -3' miRNA: 3'- -GGCCG-GCCAguuuuUCGGugUCGUGc -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 24769 | 0.73 | 0.654481 |
Target: 5'- gCgGGCUaGGaacAAAAGCCGCAGCGCGg -3' miRNA: 3'- -GgCCGG-CCaguUUUUCGGUGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 14193 | 0.73 | 0.644087 |
Target: 5'- aCCGGCCGGgugcgcgaaUCGAuuGGCCgcGCGGCucugGCGg -3' miRNA: 3'- -GGCCGGCC---------AGUUuuUCGG--UGUCG----UGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 14810 | 0.74 | 0.602497 |
Target: 5'- ---uCUGGUCGAGAAGCCGCacgcGGCACGg -3' miRNA: 3'- ggccGGCCAGUUUUUCGGUG----UCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 96716 | 0.75 | 0.51091 |
Target: 5'- gCCGGUCGGgccguugguUCAAAcGGuCCACAGUACGu -3' miRNA: 3'- -GGCCGGCC---------AGUUUuUC-GGUGUCGUGC- -5' |
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13267 | 3' | -54 | NC_003401.1 | + | 72360 | 0.66 | 0.951097 |
Target: 5'- uCCGGCCauagcccacagggGGUgAAccagguGCCACGGCGuCGg -3' miRNA: 3'- -GGCCGG-------------CCAgUUuuu---CGGUGUCGU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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