miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13268 3' -56.4 NC_003401.1 + 16663 0.66 0.868449
Target:  5'- aGGCUGCGGcgcGG-CUGUUgugcaagcggCCGCCGCa -3'
miRNA:   3'- -UUGGCGCCuu-UCaGACAA----------GGCGGCGc -5'
13268 3' -56.4 NC_003401.1 + 46321 0.66 0.860853
Target:  5'- cGCCGCGuaccaGAuagcGUCaUGUgCCGCCGCGu -3'
miRNA:   3'- uUGGCGC-----CUuu--CAG-ACAaGGCGGCGC- -5'
13268 3' -56.4 NC_003401.1 + 81979 0.66 0.853047
Target:  5'- gGGCCGUGGAGucgauaucagGGcCUGgcucgUUGCCGCGg -3'
miRNA:   3'- -UUGGCGCCUU----------UCaGACaa---GGCGGCGC- -5'
13268 3' -56.4 NC_003401.1 + 117605 0.67 0.832657
Target:  5'- cGGCCGCGGcgaccaauggCCGCCGCGg -3'
miRNA:   3'- -UUGGCGCCuuucagacaaGGCGGCGC- -5'
13268 3' -56.4 NC_003401.1 + 6531 0.67 0.828436
Target:  5'- aGACUGUGGAGGGgCUGUcUCGuucCCGCGg -3'
miRNA:   3'- -UUGGCGCCUUUCaGACAaGGC---GGCGC- -5'
13268 3' -56.4 NC_003401.1 + 103775 0.67 0.792203
Target:  5'- cGGCCGCGGGucGUUcuaaacuUGUUCCcaCCGUGg -3'
miRNA:   3'- -UUGGCGCCUuuCAG-------ACAAGGc-GGCGC- -5'
13268 3' -56.4 NC_003401.1 + 118423 0.68 0.783897
Target:  5'- gAGCCGgGGAGAauaUGUUCCGCUGaCa -3'
miRNA:   3'- -UUGGCgCCUUUcagACAAGGCGGC-Gc -5'
13268 3' -56.4 NC_003401.1 + 117748 0.68 0.764094
Target:  5'- cGCCGCGGcc-GUCUGUcuuuugcUUCGCUGCc -3'
miRNA:   3'- uUGGCGCCuuuCAGACA-------AGGCGGCGc -5'
13268 3' -56.4 NC_003401.1 + 55187 0.68 0.74572
Target:  5'- cGCCGCGGGGgcAGUCccaUCUGCCGUu -3'
miRNA:   3'- uUGGCGCCUU--UCAGacaAGGCGGCGc -5'
13268 3' -56.4 NC_003401.1 + 12659 0.69 0.725986
Target:  5'- aAACCGaGGggGGUCUGUUUCuccuguggcaGCCGUu -3'
miRNA:   3'- -UUGGCgCCuuUCAGACAAGG----------CGGCGc -5'
13268 3' -56.4 NC_003401.1 + 75808 0.69 0.715991
Target:  5'- cAGCUGCGGAGGGUUaa--CCGuuGCGg -3'
miRNA:   3'- -UUGGCGCCUUUCAGacaaGGCggCGC- -5'
13268 3' -56.4 NC_003401.1 + 82363 0.69 0.705923
Target:  5'- cAGCUGUGGcacGAGuGUCUGUggcgggcguugUCCGCCGCu -3'
miRNA:   3'- -UUGGCGCC---UUU-CAGACA-----------AGGCGGCGc -5'
13268 3' -56.4 NC_003401.1 + 47842 0.7 0.665109
Target:  5'- gGGCCGCGGGGacGGUCcg-UCCggGCCGUGg -3'
miRNA:   3'- -UUGGCGCCUU--UCAGacaAGG--CGGCGC- -5'
13268 3' -56.4 NC_003401.1 + 122402 1.06 0.003664
Target:  5'- gAACCGCGGAAAGUCUGUUCCGCCGCGc -3'
miRNA:   3'- -UUGGCGCCUUUCAGACAAGGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.