miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13268 5' -55.7 NC_003401.1 + 127857 0.66 0.869633
Target:  5'- cCCGUUGacggCGAuggcAACCAGCGCuCGCUUu -3'
miRNA:   3'- cGGCGACg---GCU----UUGGUUGCG-GCGAAc -5'
13268 5' -55.7 NC_003401.1 + 77601 0.66 0.869633
Target:  5'- cGCCGgaGCCaGAACCGuccacaACGCCGa--- -3'
miRNA:   3'- -CGGCgaCGGcUUUGGU------UGCGGCgaac -5'
13268 5' -55.7 NC_003401.1 + 23787 0.66 0.869633
Target:  5'- gGCCGCgccgGUuggcggauaauaUGAAACCGGCGCgGCcaUUGg -3'
miRNA:   3'- -CGGCGa---CG------------GCUUUGGUUGCGgCG--AAC- -5'
13268 5' -55.7 NC_003401.1 + 132654 0.67 0.846234
Target:  5'- cGCCGCcgggagggggGCCGggGCCcggGGCGCCucgGCg-- -3'
miRNA:   3'- -CGGCGa---------CGGCuuUGG---UUGCGG---CGaac -5'
13268 5' -55.7 NC_003401.1 + 133436 0.67 0.838027
Target:  5'- gGCCGCuUGCCuGcuACUAGgGCUGCUg- -3'
miRNA:   3'- -CGGCG-ACGG-CuuUGGUUgCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 721 0.67 0.838027
Target:  5'- gGCCGCuUGCCuGcuACUAGgGCUGCUg- -3'
miRNA:   3'- -CGGCG-ACGG-CuuUGGUUgCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 120758 0.67 0.838027
Target:  5'- aGCCGCUuCCGcGugCAucuagucCGCCGCUUu -3'
miRNA:   3'- -CGGCGAcGGCuUugGUu------GCGGCGAAc -5'
13268 5' -55.7 NC_003401.1 + 125260 0.67 0.829628
Target:  5'- cCCGuCUGCCaacucGGCCGugGCCGCc-- -3'
miRNA:   3'- cGGC-GACGGcu---UUGGUugCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 50822 0.67 0.828778
Target:  5'- gGCgGUUGCCGAAACCAGuuuucgcaaccacCGuCCGUg-- -3'
miRNA:   3'- -CGgCGACGGCUUUGGUU-------------GC-GGCGaac -5'
13268 5' -55.7 NC_003401.1 + 105992 0.68 0.821045
Target:  5'- cGCCGCgcGCCu-GGCCAAgGC-GCUUGg -3'
miRNA:   3'- -CGGCGa-CGGcuUUGGUUgCGgCGAAC- -5'
13268 5' -55.7 NC_003401.1 + 20290 0.68 0.821045
Target:  5'- uGCUGCUGgacgacgcgcCCGGGgacGCgGACGCCGCg-- -3'
miRNA:   3'- -CGGCGAC----------GGCUU---UGgUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 72476 0.68 0.812286
Target:  5'- cCCGCgcgucacgGCCuuGGCCGugGCCGCc-- -3'
miRNA:   3'- cGGCGa-------CGGcuUUGGUugCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 27858 0.68 0.803359
Target:  5'- cCCGCaGCCGGcgAGCCAccACGCCGg--- -3'
miRNA:   3'- cGGCGaCGGCU--UUGGU--UGCGGCgaac -5'
13268 5' -55.7 NC_003401.1 + 84120 0.68 0.803359
Target:  5'- cGCCGCUGCCuc-AUCAAauugUGCCGUUUu -3'
miRNA:   3'- -CGGCGACGGcuuUGGUU----GCGGCGAAc -5'
13268 5' -55.7 NC_003401.1 + 21316 0.68 0.803359
Target:  5'- cGCgGCgguccCCGAAGCCcuGCGCCGCc-- -3'
miRNA:   3'- -CGgCGac---GGCUUUGGu-UGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 8347 0.68 0.803359
Target:  5'- cGCgCGCUGuuccCCGAcACCAAgacCGCCGCg-- -3'
miRNA:   3'- -CG-GCGAC----GGCUuUGGUU---GCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 42081 0.68 0.803359
Target:  5'- -aCGUUGCCGAGACCAuguuuuacccgGUGCCGUUc- -3'
miRNA:   3'- cgGCGACGGCUUUGGU-----------UGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 27713 0.68 0.794273
Target:  5'- cGCCgGCUGCgGggGCgGugGuuGCg-- -3'
miRNA:   3'- -CGG-CGACGgCuuUGgUugCggCGaac -5'
13268 5' -55.7 NC_003401.1 + 110779 0.68 0.775662
Target:  5'- gGUgGCUGCCGAccuuuuggAACUAACGCaCGUg-- -3'
miRNA:   3'- -CGgCGACGGCU--------UUGGUUGCG-GCGaac -5'
13268 5' -55.7 NC_003401.1 + 118882 0.69 0.766154
Target:  5'- uGCaCGCUGCCGAGcguGCC-AC-CUGUUUGg -3'
miRNA:   3'- -CG-GCGACGGCUU---UGGuUGcGGCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.