miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13270 5' -58.8 NC_003401.1 + 21299 0.66 0.782008
Target:  5'- cGGCCCcaGAUCGCccucGCggCGGuCCCCg -3'
miRNA:   3'- uCUGGGuaCUAGCG----CGuaGCCcGGGG- -5'
13270 5' -58.8 NC_003401.1 + 118262 0.66 0.772837
Target:  5'- -cGCCCggGGUCGC-CggCGGGUCaCCg -3'
miRNA:   3'- ucUGGGuaCUAGCGcGuaGCCCGG-GG- -5'
13270 5' -58.8 NC_003401.1 + 132290 0.66 0.772837
Target:  5'- --cCCCcgGGccCGCGCGcCGGGCgCCg -3'
miRNA:   3'- ucuGGGuaCUa-GCGCGUaGCCCGgGG- -5'
13270 5' -58.8 NC_003401.1 + 73910 0.66 0.772837
Target:  5'- uGGGUCCAuuUGGUCGCGuCGaCGGuaaGCCCCu -3'
miRNA:   3'- -UCUGGGU--ACUAGCGC-GUaGCC---CGGGG- -5'
13270 5' -58.8 NC_003401.1 + 127347 0.66 0.763545
Target:  5'- cGGCCCuccUGAUgGCaucCAaCGGGCCCg -3'
miRNA:   3'- uCUGGGu--ACUAgCGc--GUaGCCCGGGg -5'
13270 5' -58.8 NC_003401.1 + 17844 0.66 0.754139
Target:  5'- cAGGCUUucGGUCGCGCAggUGGGCUUUg -3'
miRNA:   3'- -UCUGGGuaCUAGCGCGUa-GCCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 12157 0.67 0.71556
Target:  5'- gAGAUCguggaCAUGAUCGCGCGUUcGGCggaaCCg -3'
miRNA:   3'- -UCUGG-----GUACUAGCGCGUAGcCCGg---GG- -5'
13270 5' -58.8 NC_003401.1 + 118456 0.67 0.70572
Target:  5'- -aACCCAac-UCGgGuCcgCGGGCCCCg -3'
miRNA:   3'- ucUGGGUacuAGCgC-GuaGCCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 18148 0.67 0.70572
Target:  5'- uGGCCCAgGAcuaucUCG-GCGUUGGGguCCCCg -3'
miRNA:   3'- uCUGGGUaCU-----AGCgCGUAGCCC--GGGG- -5'
13270 5' -58.8 NC_003401.1 + 121196 0.68 0.675872
Target:  5'- gGGACCCAgGAUCGaccccccucgGC--CGGGCCCg -3'
miRNA:   3'- -UCUGGGUaCUAGCg---------CGuaGCCCGGGg -5'
13270 5' -58.8 NC_003401.1 + 23167 0.68 0.675872
Target:  5'- --cCCCA-GA-CGCGCGgggcccaaaGGGCCCCg -3'
miRNA:   3'- ucuGGGUaCUaGCGCGUag-------CCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 132717 0.68 0.64571
Target:  5'- -cGCCCGgcaucggGAgccgCGCGCcgcggcuuGUgGGGCCCCg -3'
miRNA:   3'- ucUGGGUa------CUa---GCGCG--------UAgCCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 27726 0.69 0.625537
Target:  5'- cGAUCCAgaaugcgGAcagUC-CGCG-CGGGCCCCg -3'
miRNA:   3'- uCUGGGUa------CU---AGcGCGUaGCCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 132434 0.7 0.516389
Target:  5'- cGGGCCCGggGggCGCGCGggGGacccucGCCCCg -3'
miRNA:   3'- -UCUGGGUa-CuaGCGCGUagCC------CGGGG- -5'
13270 5' -58.8 NC_003401.1 + 85087 0.72 0.415673
Target:  5'- gGGACCCGUG-UCGCGCGgggaGGGggaCCUg -3'
miRNA:   3'- -UCUGGGUACuAGCGCGUag--CCCg--GGG- -5'
13270 5' -58.8 NC_003401.1 + 42991 0.73 0.390344
Target:  5'- -aACCCAUGggCGuCGCAgcaGGGCUCCc -3'
miRNA:   3'- ucUGGGUACuaGC-GCGUag-CCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 132693 0.74 0.34281
Target:  5'- gGGGCCCGgcgcgGggCGCGaccgaGGGCCCCg -3'
miRNA:   3'- -UCUGGGUa----CuaGCGCguag-CCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 128794 0.75 0.306494
Target:  5'- cGGCCCAgcgagGGuUCGUGCGUUGGGCCa- -3'
miRNA:   3'- uCUGGGUa----CU-AGCGCGUAGCCCGGgg -5'
13270 5' -58.8 NC_003401.1 + 132856 0.81 0.118033
Target:  5'- gGGGCCCucGGUCGCGCcccgcgcCGGGCCCCg -3'
miRNA:   3'- -UCUGGGuaCUAGCGCGua-----GCCCGGGG- -5'
13270 5' -58.8 NC_003401.1 + 117947 0.82 0.109241
Target:  5'- gGGGCCCAUGGUgGCGCG-CGGcCCCCa -3'
miRNA:   3'- -UCUGGGUACUAgCGCGUaGCCcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.