Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13270 | 5' | -58.8 | NC_003401.1 | + | 132856 | 0.81 | 0.118033 |
Target: 5'- gGGGCCCucGGUCGCGCcccgcgcCGGGCCCCg -3' miRNA: 3'- -UCUGGGuaCUAGCGCGua-----GCCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 132717 | 0.68 | 0.64571 |
Target: 5'- -cGCCCGgcaucggGAgccgCGCGCcgcggcuuGUgGGGCCCCg -3' miRNA: 3'- ucUGGGUa------CUa---GCGCG--------UAgCCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 132693 | 0.74 | 0.34281 |
Target: 5'- gGGGCCCGgcgcgGggCGCGaccgaGGGCCCCg -3' miRNA: 3'- -UCUGGGUa----CuaGCGCguag-CCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 132434 | 0.7 | 0.516389 |
Target: 5'- cGGGCCCGggGggCGCGCGggGGacccucGCCCCg -3' miRNA: 3'- -UCUGGGUa-CuaGCGCGUagCC------CGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 132290 | 0.66 | 0.772837 |
Target: 5'- --cCCCcgGGccCGCGCGcCGGGCgCCg -3' miRNA: 3'- ucuGGGuaCUa-GCGCGUaGCCCGgGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 128794 | 0.75 | 0.306494 |
Target: 5'- cGGCCCAgcgagGGuUCGUGCGUUGGGCCa- -3' miRNA: 3'- uCUGGGUa----CU-AGCGCGUAGCCCGGgg -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 127347 | 0.66 | 0.763545 |
Target: 5'- cGGCCCuccUGAUgGCaucCAaCGGGCCCg -3' miRNA: 3'- uCUGGGu--ACUAgCGc--GUaGCCCGGGg -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 125550 | 1.1 | 0.001186 |
Target: 5'- aAGACCCAUGAUCGCGCAUCGGGCCCCc -3' miRNA: 3'- -UCUGGGUACUAGCGCGUAGCCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 121196 | 0.68 | 0.675872 |
Target: 5'- gGGACCCAgGAUCGaccccccucgGC--CGGGCCCg -3' miRNA: 3'- -UCUGGGUaCUAGCg---------CGuaGCCCGGGg -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 118456 | 0.67 | 0.70572 |
Target: 5'- -aACCCAac-UCGgGuCcgCGGGCCCCg -3' miRNA: 3'- ucUGGGUacuAGCgC-GuaGCCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 118262 | 0.66 | 0.772837 |
Target: 5'- -cGCCCggGGUCGC-CggCGGGUCaCCg -3' miRNA: 3'- ucUGGGuaCUAGCGcGuaGCCCGG-GG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 117947 | 0.82 | 0.109241 |
Target: 5'- gGGGCCCAUGGUgGCGCG-CGGcCCCCa -3' miRNA: 3'- -UCUGGGUACUAgCGCGUaGCCcGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 85087 | 0.72 | 0.415673 |
Target: 5'- gGGACCCGUG-UCGCGCGgggaGGGggaCCUg -3' miRNA: 3'- -UCUGGGUACuAGCGCGUag--CCCg--GGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 73910 | 0.66 | 0.772837 |
Target: 5'- uGGGUCCAuuUGGUCGCGuCGaCGGuaaGCCCCu -3' miRNA: 3'- -UCUGGGU--ACUAGCGC-GUaGCC---CGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 42991 | 0.73 | 0.390344 |
Target: 5'- -aACCCAUGggCGuCGCAgcaGGGCUCCc -3' miRNA: 3'- ucUGGGUACuaGC-GCGUag-CCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 27726 | 0.69 | 0.625537 |
Target: 5'- cGAUCCAgaaugcgGAcagUC-CGCG-CGGGCCCCg -3' miRNA: 3'- uCUGGGUa------CU---AGcGCGUaGCCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 23167 | 0.68 | 0.675872 |
Target: 5'- --cCCCA-GA-CGCGCGgggcccaaaGGGCCCCg -3' miRNA: 3'- ucuGGGUaCUaGCGCGUag-------CCCGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 21299 | 0.66 | 0.782008 |
Target: 5'- cGGCCCcaGAUCGCccucGCggCGGuCCCCg -3' miRNA: 3'- uCUGGGuaCUAGCG----CGuaGCCcGGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 18148 | 0.67 | 0.70572 |
Target: 5'- uGGCCCAgGAcuaucUCG-GCGUUGGGguCCCCg -3' miRNA: 3'- uCUGGGUaCU-----AGCgCGUAGCCC--GGGG- -5' |
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13270 | 5' | -58.8 | NC_003401.1 | + | 17844 | 0.66 | 0.754139 |
Target: 5'- cAGGCUUucGGUCGCGCAggUGGGCUUUg -3' miRNA: 3'- -UCUGGGuaCUAGCGCGUa-GCCCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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