miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13271 3' -49.7 NC_003401.1 + 44165 0.66 0.996534
Target:  5'- -uUUUCGAgggGGUGGU-GCCACCugagGUa -3'
miRNA:   3'- guAGAGCUa--UCGCCAuUGGUGGua--CG- -5'
13271 3' -49.7 NC_003401.1 + 91376 0.66 0.995215
Target:  5'- -cUCUCGcggcaGGUGG-AugUACCGUGCa -3'
miRNA:   3'- guAGAGCua---UCGCCaUugGUGGUACG- -5'
13271 3' -49.7 NC_003401.1 + 4307 0.67 0.993516
Target:  5'- aCAUCUUGGUuaGGUaGGUAGuCC-CCAUGUu -3'
miRNA:   3'- -GUAGAGCUA--UCG-CCAUU-GGuGGUACG- -5'
13271 3' -49.7 NC_003401.1 + 78248 0.68 0.987119
Target:  5'- aCAcCUCGGguugcAGCGGUGGCgGCgCcgGCa -3'
miRNA:   3'- -GUaGAGCUa----UCGCCAUUGgUG-GuaCG- -5'
13271 3' -49.7 NC_003401.1 + 11859 0.68 0.987119
Target:  5'- cCGUCuaUCGAgGGUGGaccgaGACCGCCGUGa -3'
miRNA:   3'- -GUAG--AGCUaUCGCCa----UUGGUGGUACg -5'
13271 3' -49.7 NC_003401.1 + 102451 0.68 0.985213
Target:  5'- -uUCUCGAaaccAGCGGUucgaaaaacucaaGGCCGCCAUcCa -3'
miRNA:   3'- guAGAGCUa---UCGCCA-------------UUGGUGGUAcG- -5'
13271 3' -49.7 NC_003401.1 + 132752 0.68 0.983499
Target:  5'- -----gGAggccGGCGGagGACCGCCAUGCc -3'
miRNA:   3'- guagagCUa---UCGCCa-UUGGUGGUACG- -5'
13271 3' -49.7 NC_003401.1 + 132569 0.69 0.974024
Target:  5'- -cUCcCGAUgccgGGCGGccGCCGCCcgGCa -3'
miRNA:   3'- guAGaGCUA----UCGCCauUGGUGGuaCG- -5'
13271 3' -49.7 NC_003401.1 + 84165 0.69 0.971137
Target:  5'- cCAUCaaaGGUuuuacccggaaGGCGGUccagccGCCACCGUGCg -3'
miRNA:   3'- -GUAGag-CUA-----------UCGCCAu-----UGGUGGUACG- -5'
13271 3' -49.7 NC_003401.1 + 69370 0.7 0.961108
Target:  5'- ---gUCGAUuGCGGgaAACCAgCAUGCg -3'
miRNA:   3'- guagAGCUAuCGCCa-UUGGUgGUACG- -5'
13271 3' -49.7 NC_003401.1 + 80377 0.7 0.960737
Target:  5'- -uUCUCGAagucccaUGGCGGacgGACCACCGc-- -3'
miRNA:   3'- guAGAGCU-------AUCGCCa--UUGGUGGUacg -5'
13271 3' -49.7 NC_003401.1 + 80658 0.7 0.944312
Target:  5'- aCAUCUgCGcccacGGCGGUAGCCGCauggGCg -3'
miRNA:   3'- -GUAGA-GCua---UCGCCAUUGGUGgua-CG- -5'
13271 3' -49.7 NC_003401.1 + 100831 0.71 0.93947
Target:  5'- aCGUgUCGGUGGUGGUucucGgCACgCGUGCg -3'
miRNA:   3'- -GUAgAGCUAUCGCCAu---UgGUG-GUACG- -5'
13271 3' -49.7 NC_003401.1 + 126867 0.71 0.917465
Target:  5'- cCAUCUgCGA-GGCGGUcACCAacaUCAUGCu -3'
miRNA:   3'- -GUAGA-GCUaUCGCCAuUGGU---GGUACG- -5'
13271 3' -49.7 NC_003401.1 + 11733 0.72 0.904879
Target:  5'- --cCUUGggGGUGGUGacguuuucgccaACCGCCGUGCc -3'
miRNA:   3'- guaGAGCuaUCGCCAU------------UGGUGGUACG- -5'
13271 3' -49.7 NC_003401.1 + 6971 0.72 0.898195
Target:  5'- --aUUUGAUGGuuGUGACCACCAgagGCu -3'
miRNA:   3'- guaGAGCUAUCgcCAUUGGUGGUa--CG- -5'
13271 3' -49.7 NC_003401.1 + 104126 0.72 0.891254
Target:  5'- aGUUgcgUGAUAGCGGUuGCCAUCuUGCc -3'
miRNA:   3'- gUAGa--GCUAUCGCCAuUGGUGGuACG- -5'
13271 3' -49.7 NC_003401.1 + 92053 0.72 0.884062
Target:  5'- gCGUUUCGcuuaacgAGaCGGUGACCACC-UGCu -3'
miRNA:   3'- -GUAGAGCua-----UC-GCCAUUGGUGGuACG- -5'
13271 3' -49.7 NC_003401.1 + 16310 0.75 0.770617
Target:  5'- gCGUCUCGGUcGCgaGGUGACCGCCcgucacgGCg -3'
miRNA:   3'- -GUAGAGCUAuCG--CCAUUGGUGGua-----CG- -5'
13271 3' -49.7 NC_003401.1 + 69760 0.76 0.730066
Target:  5'- gGUUUCGGcgaagGGCGGagagccGGCCGCCAUGCg -3'
miRNA:   3'- gUAGAGCUa----UCGCCa-----UUGGUGGUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.