miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13271 5' -58.1 NC_003401.1 + 78072 0.66 0.828329
Target:  5'- cGAUaGUCGUGGCCGuaugugcgucGAcCGCgGCCAGc -3'
miRNA:   3'- aCUG-CAGCACCGGC----------CU-GUGgUGGUCu -5'
13271 5' -58.1 NC_003401.1 + 42291 0.66 0.828329
Target:  5'- gGugGagCGUGGCC----GCCACCAGGg -3'
miRNA:   3'- aCugCa-GCACCGGccugUGGUGGUCU- -5'
13271 5' -58.1 NC_003401.1 + 119269 0.66 0.819925
Target:  5'- aGGCGcgaCGUGGCCaaggucGugGCCGCCAa- -3'
miRNA:   3'- aCUGCa--GCACCGGc-----CugUGGUGGUcu -5'
13271 5' -58.1 NC_003401.1 + 53023 0.66 0.811353
Target:  5'- cUGcUGUCGUGcGCCGGGgGCC-CgCAGGc -3'
miRNA:   3'- -ACuGCAGCAC-CGGCCUgUGGuG-GUCU- -5'
13271 5' -58.1 NC_003401.1 + 27836 0.66 0.811353
Target:  5'- aGACG-CGUaGGUCuGugGCCACgAGAa -3'
miRNA:   3'- aCUGCaGCA-CCGGcCugUGGUGgUCU- -5'
13271 5' -58.1 NC_003401.1 + 104972 0.67 0.756877
Target:  5'- aGACa--GUGGCCcGACAUCGCuCAGAc -3'
miRNA:   3'- aCUGcagCACCGGcCUGUGGUG-GUCU- -5'
13271 5' -58.1 NC_003401.1 + 13157 0.67 0.756877
Target:  5'- aUGGCGUCGcccacgaacuUGGCC-GACACCGgCCGc- -3'
miRNA:   3'- -ACUGCAGC----------ACCGGcCUGUGGU-GGUcu -5'
13271 5' -58.1 NC_003401.1 + 125814 0.68 0.718291
Target:  5'- cGACGUCGcGGCCGu-CuCCACCGa- -3'
miRNA:   3'- aCUGCAGCaCCGGCcuGuGGUGGUcu -5'
13271 5' -58.1 NC_003401.1 + 87952 0.68 0.708442
Target:  5'- gUGGCGggGUGGCU-GACACCGCacuCAGAu -3'
miRNA:   3'- -ACUGCagCACCGGcCUGUGGUG---GUCU- -5'
13271 5' -58.1 NC_003401.1 + 132295 0.68 0.69853
Target:  5'- gGGCc-CGcGcGCCGGGCGCCGCCGGc -3'
miRNA:   3'- aCUGcaGCaC-CGGCCUGUGGUGGUCu -5'
13271 5' -58.1 NC_003401.1 + 118112 0.68 0.678551
Target:  5'- gGACGgUGggGGCCGcGCGCCACCAu- -3'
miRNA:   3'- aCUGCaGCa-CCGGCcUGUGGUGGUcu -5'
13271 5' -58.1 NC_003401.1 + 63767 0.68 0.678551
Target:  5'- aGACGcCGaugagGGCaCGGGCGCCACUg-- -3'
miRNA:   3'- aCUGCaGCa----CCG-GCCUGUGGUGGucu -5'
13271 5' -58.1 NC_003401.1 + 132219 0.69 0.658423
Target:  5'- aGGCG-CccGGCCGGcgcCGCCGCCGGGc -3'
miRNA:   3'- aCUGCaGcaCCGGCCu--GUGGUGGUCU- -5'
13271 5' -58.1 NC_003401.1 + 8741 0.69 0.648324
Target:  5'- cGACGgcgCGUcaGCCGGuCGCCGCCAc- -3'
miRNA:   3'- aCUGCa--GCAc-CGGCCuGUGGUGGUcu -5'
13271 5' -58.1 NC_003401.1 + 58077 0.7 0.607881
Target:  5'- gGAC-UCGUGGCUGGACuguCUAgUAGAa -3'
miRNA:   3'- aCUGcAGCACCGGCCUGu--GGUgGUCU- -5'
13271 5' -58.1 NC_003401.1 + 70637 0.72 0.480452
Target:  5'- aGGCGUCuGUGGCCGagcaaGGCACCucaCAGGg -3'
miRNA:   3'- aCUGCAG-CACCGGC-----CUGUGGug-GUCU- -5'
13271 5' -58.1 NC_003401.1 + 132373 0.75 0.314624
Target:  5'- cGGCGgCGccGGCCGGGCGCCuCCGGGc -3'
miRNA:   3'- aCUGCaGCa-CCGGCCUGUGGuGGUCU- -5'
13271 5' -58.1 NC_003401.1 + 132666 0.79 0.191079
Target:  5'- gGGCGUCGgGGCgCGG-CGCCGCCGGGc -3'
miRNA:   3'- aCUGCAGCaCCG-GCCuGUGGUGGUCU- -5'
13271 5' -58.1 NC_003401.1 + 126219 1.08 0.001976
Target:  5'- cUGACGUCGUGGCCGGACACCACCAGAc -3'
miRNA:   3'- -ACUGCAGCACCGGCCUGUGGUGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.