miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13273 5' -50.5 NC_003409.1 + 28809 0.67 0.974301
Target:  5'- uGAAGCGGcaGCCA--AGGugacugGGCAGUCCc -3'
miRNA:   3'- -UUUCGUC--UGGUugUCCua----CUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 74264 0.67 0.974301
Target:  5'- cGAAGCGGGCCcugaAACauGGGAUGuCGGgucgCCu -3'
miRNA:   3'- -UUUCGUCUGG----UUG--UCCUACuGUCa---GG- -5'
13273 5' -50.5 NC_003409.1 + 82552 0.67 0.974023
Target:  5'- --cGCAGgucaauuGCCAgcgGCAGGAUGACGacGUCa -3'
miRNA:   3'- uuuCGUC-------UGGU---UGUCCUACUGU--CAGg -5'
13273 5' -50.5 NC_003409.1 + 63089 0.68 0.964974
Target:  5'- cAAGGCGGGgCAccACAGGGUGGgGGUa- -3'
miRNA:   3'- -UUUCGUCUgGU--UGUCCUACUgUCAgg -5'
13273 5' -50.5 NC_003409.1 + 52021 0.68 0.95757
Target:  5'- cGGAGaAGGCCGGuCAGGAccUGcaACGGUCCa -3'
miRNA:   3'- -UUUCgUCUGGUU-GUCCU--AC--UGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 74524 0.7 0.92921
Target:  5'- gGAGGguGACC-GCAGaggcGGUGGCGuGUCCa -3'
miRNA:   3'- -UUUCguCUGGuUGUC----CUACUGU-CAGG- -5'
13273 5' -50.5 NC_003409.1 + 56146 0.7 0.92921
Target:  5'- gGGGGCAGugCAcgcacCAGGAUccaGACuGGUCCa -3'
miRNA:   3'- -UUUCGUCugGUu----GUCCUA---CUG-UCAGG- -5'
13273 5' -50.5 NC_003409.1 + 31675 0.7 0.923554
Target:  5'- cAGGGcCAGGCCuAAUGGGGUGugGGggCCa -3'
miRNA:   3'- -UUUC-GUCUGG-UUGUCCUACugUCa-GG- -5'
13273 5' -50.5 NC_003409.1 + 125147 0.7 0.923554
Target:  5'- uGAGCAGcAgCAGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uUUCGUC-UgGUUGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 125111 0.7 0.923554
Target:  5'- uGAGCAGcAgCAGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uUUCGUC-UgGUUGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 125180 0.7 0.904985
Target:  5'- uGAGCAGGagCAGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uUUCGUCUg-GUUGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 70577 0.7 0.904985
Target:  5'- --uGCccauGGgCGGguGGGUGACAGUCCg -3'
miRNA:   3'- uuuCGu---CUgGUUguCCUACUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 40284 0.71 0.898267
Target:  5'- --cGUAGAgUGGCAGGGUaGACgAGUCCg -3'
miRNA:   3'- uuuCGUCUgGUUGUCCUA-CUG-UCAGG- -5'
13273 5' -50.5 NC_003409.1 + 125075 0.71 0.89129
Target:  5'- uGAGCAGcAgCAGCAGGAUGaACAGg-- -3'
miRNA:   3'- uUUCGUC-UgGUUGUCCUAC-UGUCagg -5'
13273 5' -50.5 NC_003409.1 + 115213 0.71 0.89129
Target:  5'- --cGCGGACCAgagaaaAUAGGAgcUGACAGaCCc -3'
miRNA:   3'- uuuCGUCUGGU------UGUCCU--ACUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 91467 0.71 0.876575
Target:  5'- gGAGGCAGACCAuucugACAGGucaacAUGGCGGg-- -3'
miRNA:   3'- -UUUCGUCUGGU-----UGUCC-----UACUGUCagg -5'
13273 5' -50.5 NC_003409.1 + 125216 0.71 0.868848
Target:  5'- uGAGCAGGagCAGCAGGAUGAgCAGg-- -3'
miRNA:   3'- uUUCGUCUg-GUUGUCCUACU-GUCagg -5'
13273 5' -50.5 NC_003409.1 + 98847 0.72 0.835628
Target:  5'- uGAGGCcuuGGgCGACgcaguaAGGGUGGCAGUCCu -3'
miRNA:   3'- -UUUCGu--CUgGUUG------UCCUACUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 133538 0.73 0.816827
Target:  5'- -cAGCAGGCCGagaugcuGCAGGAgcGGgAGUCCc -3'
miRNA:   3'- uuUCGUCUGGU-------UGUCCUa-CUgUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 119530 0.74 0.729076
Target:  5'- -cGGCGGACCAAUGGGAgcggGGCAGa-- -3'
miRNA:   3'- uuUCGUCUGGUUGUCCUa---CUGUCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.