miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13274 3' -58.3 NC_003409.1 + 103427 0.66 0.783883
Target:  5'- gCUAcggUGGCCUCC-CuGGuGGCCUGUUc -3'
miRNA:   3'- -GAUa--ACCGGAGGcGuCCuCUGGGCGA- -5'
13274 3' -58.3 NC_003409.1 + 51874 0.66 0.774626
Target:  5'- ----cGGCCuucUCCGCGcagggucagcGGAGACCgCGCc -3'
miRNA:   3'- gauaaCCGG---AGGCGU----------CCUCUGG-GCGa -5'
13274 3' -58.3 NC_003409.1 + 78388 0.66 0.765243
Target:  5'- ---cUGGCgUCCGUuuccGGGAGGCUCGa- -3'
miRNA:   3'- gauaACCGgAGGCG----UCCUCUGGGCga -5'
13274 3' -58.3 NC_003409.1 + 125480 0.66 0.755743
Target:  5'- ---gUGGCUcCCGCugcuGGGGcuCCCGCUg -3'
miRNA:   3'- gauaACCGGaGGCGu---CCUCu-GGGCGA- -5'
13274 3' -58.3 NC_003409.1 + 16471 0.66 0.783883
Target:  5'- ---cUGcGCCUgCGCAGGAaacGCCCGUc -3'
miRNA:   3'- gauaAC-CGGAgGCGUCCUc--UGGGCGa -5'
13274 3' -58.3 NC_003409.1 + 42925 0.66 0.755743
Target:  5'- -gGUUGGCCUCCGUGGcGAGGuaCGg- -3'
miRNA:   3'- gaUAACCGGAGGCGUC-CUCUggGCga -5'
13274 3' -58.3 NC_003409.1 + 65710 0.66 0.755743
Target:  5'- ----aGGCgUCCGUcuggguGGGAGACCCcacGCa -3'
miRNA:   3'- gauaaCCGgAGGCG------UCCUCUGGG---CGa -5'
13274 3' -58.3 NC_003409.1 + 84412 0.66 0.755743
Target:  5'- ----cGGCCUUgCGUAGG-GAcCCCGCa -3'
miRNA:   3'- gauaaCCGGAG-GCGUCCuCU-GGGCGa -5'
13274 3' -58.3 NC_003409.1 + 132272 0.67 0.716746
Target:  5'- ----cGGCCUCCuaCAGGAGugccucuucGCCUGCa -3'
miRNA:   3'- gauaaCCGGAGGc-GUCCUC---------UGGGCGa -5'
13274 3' -58.3 NC_003409.1 + 122973 0.67 0.72367
Target:  5'- gCUGUUGGUuccugccaacgucaUUCCGCAGGAuACCCa-- -3'
miRNA:   3'- -GAUAACCG--------------GAGGCGUCCUcUGGGcga -5'
13274 3' -58.3 NC_003409.1 + 43530 0.69 0.605252
Target:  5'- ----cGGCCUCUgggcaGCAGGuGGCCgGCg -3'
miRNA:   3'- gauaaCCGGAGG-----CGUCCuCUGGgCGa -5'
13274 3' -58.3 NC_003409.1 + 26088 0.69 0.574819
Target:  5'- ----cGGCC-CCGgGGGAGAauguuCCCGCa -3'
miRNA:   3'- gauaaCCGGaGGCgUCCUCU-----GGGCGa -5'
13274 3' -58.3 NC_003409.1 + 22245 0.7 0.54475
Target:  5'- ---gUGcGCCgcUUCGCAGGcGACCCGCa -3'
miRNA:   3'- gauaAC-CGG--AGGCGUCCuCUGGGCGa -5'
13274 3' -58.3 NC_003409.1 + 125767 0.7 0.54475
Target:  5'- gCUGUUGuGgCUCCuGCAGGGGcuCCUGCUg -3'
miRNA:   3'- -GAUAAC-CgGAGG-CGUCCUCu-GGGCGA- -5'
13274 3' -58.3 NC_003409.1 + 125711 0.7 0.54475
Target:  5'- gCUGUUGuGgCUCCuGCAGGGGcuCCUGCUg -3'
miRNA:   3'- -GAUAAC-CgGAGG-CGUCCUCu-GGGCGA- -5'
13274 3' -58.3 NC_003409.1 + 36272 0.7 0.534837
Target:  5'- ---cUGGUaag-GCGGGAGACCCGCUg -3'
miRNA:   3'- gauaACCGgaggCGUCCUCUGGGCGA- -5'
13274 3' -58.3 NC_003409.1 + 131821 0.7 0.548732
Target:  5'- ---cUGGCCggCUGCAGGGGAcugcagcucucacuaCCCGCc -3'
miRNA:   3'- gauaACCGGa-GGCGUCCUCU---------------GGGCGa -5'
13274 3' -58.3 NC_003409.1 + 125669 0.7 0.54475
Target:  5'- gCUGUUGuGgCUCCuGCAGGGGcuCCUGCUg -3'
miRNA:   3'- -GAUAAC-CgGAGG-CGUCCUCu-GGGCGA- -5'
13274 3' -58.3 NC_003409.1 + 132115 0.72 0.413468
Target:  5'- ----aGGCaCUCCuGUAGGAGGCCgGCUu -3'
miRNA:   3'- gauaaCCG-GAGG-CGUCCUCUGGgCGA- -5'
13274 3' -58.3 NC_003409.1 + 13702 1.08 0.001801
Target:  5'- uCUAUUGGCCUCCGCAGGAGACCCGCUa -3'
miRNA:   3'- -GAUAACCGGAGGCGUCCUCUGGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.