miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13274 5' -53.2 NC_003409.1 + 106599 0.67 0.93191
Target:  5'- aCGGGuaGUGgcucuaccGCCUCUGC-AGGGCgUGAGg -3'
miRNA:   3'- -GCUC--UAC--------CGGAGAUGuUUCCGgACUC- -5'
13274 5' -53.2 NC_003409.1 + 43336 0.67 0.926527
Target:  5'- uGAGAggGGCCUCaa-AAAGGCCg--- -3'
miRNA:   3'- gCUCUa-CCGGAGaugUUUCCGGacuc -5'
13274 5' -53.2 NC_003409.1 + 46985 0.67 0.924863
Target:  5'- gGAGAUuGCCaccgUUUACAAaauauacaggcauuGGGCCUGGGg -3'
miRNA:   3'- gCUCUAcCGG----AGAUGUU--------------UCCGGACUC- -5'
13274 5' -53.2 NC_003409.1 + 76179 0.68 0.914997
Target:  5'- gGAGAcGGCCUCUA---GGGCCg--- -3'
miRNA:   3'- gCUCUaCCGGAGAUguuUCCGGacuc -5'
13274 5' -53.2 NC_003409.1 + 77134 0.69 0.866818
Target:  5'- aGAGAUcGGCCUCUGac--GGCCaccGAGa -3'
miRNA:   3'- gCUCUA-CCGGAGAUguuuCCGGa--CUC- -5'
13274 5' -53.2 NC_003409.1 + 13496 0.69 0.866818
Target:  5'- aGAGAUcucaGGCCUUUGUAGAGGCCa--- -3'
miRNA:   3'- gCUCUA----CCGGAGAUGUUUCCGGacuc -5'
13274 5' -53.2 NC_003409.1 + 32594 0.69 0.856604
Target:  5'- aCGAGGUGGuCCUgggacgcaagguucCUGCGGAGGUgUGGa -3'
miRNA:   3'- -GCUCUACC-GGA--------------GAUGUUUCCGgACUc -5'
13274 5' -53.2 NC_003409.1 + 32731 0.7 0.834238
Target:  5'- -aAGGUgGGgCUCUugAGGGGCCUGGc -3'
miRNA:   3'- gcUCUA-CCgGAGAugUUUCCGGACUc -5'
13274 5' -53.2 NC_003409.1 + 123920 0.72 0.730256
Target:  5'- aCGGGGccuGCCUUUACuccuccaaacugGAAGGCCUGAGa -3'
miRNA:   3'- -GCUCUac-CGGAGAUG------------UUUCCGGACUC- -5'
13274 5' -53.2 NC_003409.1 + 131832 0.72 0.689028
Target:  5'- uCGAGAUGGCCcuggccggCUGCAGGGGaCUGcAGc -3'
miRNA:   3'- -GCUCUACCGGa-------GAUGUUUCCgGAC-UC- -5'
13274 5' -53.2 NC_003409.1 + 13665 1.1 0.003948
Target:  5'- gCGAGAUGGCCUCUACAAAGGCCUGAGa -3'
miRNA:   3'- -GCUCUACCGGAGAUGUUUCCGGACUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.