miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13275 3' -57.9 NC_003409.1 + 17921 0.66 0.78182
Target:  5'- aGGGCggGGUCGCgGGUCggGGcCGCUCc -3'
miRNA:   3'- aUUCGaaCCGGCG-CCGGaaCU-GCGAG- -5'
13275 3' -57.9 NC_003409.1 + 109823 0.66 0.78182
Target:  5'- gGAGUUUGGuCCGCcGCCcaaGACGC-Cg -3'
miRNA:   3'- aUUCGAACC-GGCGcCGGaa-CUGCGaG- -5'
13275 3' -57.9 NC_003409.1 + 4178 0.66 0.761835
Target:  5'- gAAGUUUGGCaCGCagagcaGGCCUugcauauUGGCGCcCa -3'
miRNA:   3'- aUUCGAACCG-GCG------CCGGA-------ACUGCGaG- -5'
13275 3' -57.9 NC_003409.1 + 2800 0.66 0.743302
Target:  5'- gGAGUgUUGGUucuCGCGGUCUUGAgGCa- -3'
miRNA:   3'- aUUCG-AACCG---GCGCCGGAACUgCGag -5'
13275 3' -57.9 NC_003409.1 + 91940 0.67 0.733398
Target:  5'- cAGGCgacGGCCgGCGGCCcagaaacaggGACGCg- -3'
miRNA:   3'- aUUCGaa-CCGG-CGCCGGaa--------CUGCGag -5'
13275 3' -57.9 NC_003409.1 + 112955 0.67 0.717367
Target:  5'- --cGCgUGGCCcgcGCGGCCcUUGccaagcgggcgcguuGCGCUCg -3'
miRNA:   3'- auuCGaACCGG---CGCCGG-AAC---------------UGCGAG- -5'
13275 3' -57.9 NC_003409.1 + 13889 0.68 0.662073
Target:  5'- cGAGCgucaaGGCCGCGGCCaa---GCUUa -3'
miRNA:   3'- aUUCGaa---CCGGCGCCGGaacugCGAG- -5'
13275 3' -57.9 NC_003409.1 + 55898 0.68 0.651711
Target:  5'- gAAGaggUGGCCGUGcGCCUaGAUGCg- -3'
miRNA:   3'- aUUCga-ACCGGCGC-CGGAaCUGCGag -5'
13275 3' -57.9 NC_003409.1 + 19450 0.69 0.589494
Target:  5'- ------gGGCCGCuGGCCUUGcCGCUg -3'
miRNA:   3'- auucgaaCCGGCG-CCGGAACuGCGAg -5'
13275 3' -57.9 NC_003409.1 + 97140 0.69 0.558711
Target:  5'- -cGGUUUauccaGGCCaagGCGGCCggggUGACGCUUg -3'
miRNA:   3'- auUCGAA-----CCGG---CGCCGGa---ACUGCGAG- -5'
13275 3' -57.9 NC_003409.1 + 116070 0.7 0.528398
Target:  5'- aAAGCUcagGGCaucCGCGGCCgccgGACaGCUCc -3'
miRNA:   3'- aUUCGAa--CCG---GCGCCGGaa--CUG-CGAG- -5'
13275 3' -57.9 NC_003409.1 + 108445 0.7 0.514458
Target:  5'- cGAGCUagaGGCCGCGGCUacgcacggcgacGACGCUa -3'
miRNA:   3'- aUUCGAa--CCGGCGCCGGaa----------CUGCGAg -5'
13275 3' -57.9 NC_003409.1 + 20804 0.71 0.488984
Target:  5'- gGAGUUccUGGCCgggcGCGGCCU-GGCGCa- -3'
miRNA:   3'- aUUCGA--ACCGG----CGCCGGAaCUGCGag -5'
13275 3' -57.9 NC_003409.1 + 109170 0.72 0.423604
Target:  5'- gGGGUUcgUGGCCGcCGGCUggGACGCa- -3'
miRNA:   3'- aUUCGA--ACCGGC-GCCGGaaCUGCGag -5'
13275 3' -57.9 NC_003409.1 + 14052 1.08 0.001424
Target:  5'- aUAAGCUUGGCCGCGGCCUUGACGCUCg -3'
miRNA:   3'- -AUUCGAACCGGCGCCGGAACUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.