miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13276 3' -54.6 NC_003409.1 + 15596 1.09 0.00329
Target:  5'- uCACGGGCGAGCCCCAUGAUGACAAAGg -3'
miRNA:   3'- -GUGCCCGCUCGGGGUACUACUGUUUC- -5'
13276 3' -54.6 NC_003409.1 + 30364 0.66 0.91311
Target:  5'- uGgGGGCGAGCCCUGgcuauacUGAccuuUGGCAGu- -3'
miRNA:   3'- gUgCCCGCUCGGGGU-------ACU----ACUGUUuc -5'
13276 3' -54.6 NC_003409.1 + 39984 0.66 0.930592
Target:  5'- uGCGGuugGCG-GCCUCGUcGAUGACGAc- -3'
miRNA:   3'- gUGCC---CGCuCGGGGUA-CUACUGUUuc -5'
13276 3' -54.6 NC_003409.1 + 74056 0.66 0.921867
Target:  5'- -uUGGGCGAGCgCCggGAggaacgcgcuggccGGCAGAGg -3'
miRNA:   3'- guGCCCGCUCGgGGuaCUa-------------CUGUUUC- -5'
13276 3' -54.6 NC_003409.1 + 81117 0.66 0.925213
Target:  5'- -uUGGGUcgGAG-CCCAUGGUGGCAc-- -3'
miRNA:   3'- guGCCCG--CUCgGGGUACUACUGUuuc -5'
13276 3' -54.6 NC_003409.1 + 82857 0.67 0.899265
Target:  5'- gGCGGGaauGAagacauugaaacauGCgCCAUGGUGGCGGGGg -3'
miRNA:   3'- gUGCCCg--CU--------------CGgGGUACUACUGUUUC- -5'
13276 3' -54.6 NC_003409.1 + 93755 0.67 0.901222
Target:  5'- -uUGGGaucuauCCCCAUGAUGACAAAc -3'
miRNA:   3'- guGCCCgcuc--GGGGUACUACUGUUUc -5'
13276 3' -54.6 NC_003409.1 + 100670 0.68 0.865835
Target:  5'- -cCGGGaCGAGCCCCGUGcacACGuAGg -3'
miRNA:   3'- guGCCC-GCUCGGGGUACuacUGUuUC- -5'
13276 3' -54.6 NC_003409.1 + 109094 0.67 0.887766
Target:  5'- -cCGuaGCGGGCCCCGUGccugGACGGGGu -3'
miRNA:   3'- guGCc-CGCUCGGGGUACua--CUGUUUC- -5'
13276 3' -54.6 NC_003409.1 + 132209 0.66 0.935722
Target:  5'- aCAUGaGGUuggugaGAGCCUCGgUGAUGGCAuAGg -3'
miRNA:   3'- -GUGC-CCG------CUCGGGGU-ACUACUGUuUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.