miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13276 5' -54 NC_003409.1 + 11732 0.66 0.947759
Target:  5'- -----cGGCACCGUccucaaGCUGCUCG-GCAg -3'
miRNA:   3'- ccgcaaCCGUGGUA------CGACGAGCuUGU- -5'
13276 5' -54 NC_003409.1 + 87394 0.66 0.947759
Target:  5'- cGCGggGGCGCUggGCgguugagGUUCGAAgGg -3'
miRNA:   3'- cCGCaaCCGUGGuaCGa------CGAGCUUgU- -5'
13276 5' -54 NC_003409.1 + 116256 0.66 0.938456
Target:  5'- gGGUGUUGGCAUCGaggaGCUGUcCG-GCGg -3'
miRNA:   3'- -CCGCAACCGUGGUa---CGACGaGCuUGU- -5'
13276 5' -54 NC_003409.1 + 112930 0.67 0.910811
Target:  5'- aGCG--GGCGCguUGC-GCUCGGGCGg -3'
miRNA:   3'- cCGCaaCCGUGguACGaCGAGCUUGU- -5'
13276 5' -54 NC_003409.1 + 119807 0.67 0.90453
Target:  5'- cGGCGUgGGCGCCGcGCgcgUGCUCucuCAg -3'
miRNA:   3'- -CCGCAaCCGUGGUaCG---ACGAGcuuGU- -5'
13276 5' -54 NC_003409.1 + 26938 0.68 0.876974
Target:  5'- gGGCGggGcGCGCCGUGU--UUUGGACAa -3'
miRNA:   3'- -CCGCaaC-CGUGGUACGacGAGCUUGU- -5'
13276 5' -54 NC_003409.1 + 47279 0.68 0.861796
Target:  5'- cGCGUUaGGCGCag-GCUGUcCGGGCGa -3'
miRNA:   3'- cCGCAA-CCGUGguaCGACGaGCUUGU- -5'
13276 5' -54 NC_003409.1 + 99493 0.69 0.820157
Target:  5'- uGGCG-UGGCGCagcacaCGUGCUGCgcagCGAGg- -3'
miRNA:   3'- -CCGCaACCGUG------GUACGACGa---GCUUgu -5'
13276 5' -54 NC_003409.1 + 107817 0.72 0.687593
Target:  5'- cGGCGUUagccagucgaagggcGGCGCCugaaaagGCUGCgcgUCGGGCAg -3'
miRNA:   3'- -CCGCAA---------------CCGUGGua-----CGACG---AGCUUGU- -5'
13276 5' -54 NC_003409.1 + 23573 0.72 0.683437
Target:  5'- gGGCGUccaauggaaUGGCGCgGUcGCcuaGCUCGAACGg -3'
miRNA:   3'- -CCGCA---------ACCGUGgUA-CGa--CGAGCUUGU- -5'
13276 5' -54 NC_003409.1 + 119437 0.72 0.683437
Target:  5'- gGGCGUccaauggaaUGGCGCgGUcGCcuaGCUCGAACGg -3'
miRNA:   3'- -CCGCA---------ACCGUGgUA-CGa--CGAGCUUGU- -5'
13276 5' -54 NC_003409.1 + 107663 0.77 0.421541
Target:  5'- cGGCGUUGGUACUccGCUGC-CaGGGCAu -3'
miRNA:   3'- -CCGCAACCGUGGuaCGACGaG-CUUGU- -5'
13276 5' -54 NC_003409.1 + 15559 1.12 0.002475
Target:  5'- cGGCGUUGGCACCAUGCUGCUCGAACAg -3'
miRNA:   3'- -CCGCAACCGUGGUACGACGAGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.