miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 3' -56.1 NC_003409.1 + 80673 0.7 0.661277
Target:  5'- uGGGaGCAaaGUgugauauuUCCAGGCGACCAGGAc- -3'
miRNA:   3'- cCCC-CGU--CG--------AGGUCCGCUGGUUUUac -5'
13277 3' -56.1 NC_003409.1 + 96858 0.74 0.45936
Target:  5'- aGGGGGCAcGCUUCuGGCGgaggcguGCCAAAuAUGg -3'
miRNA:   3'- -CCCCCGU-CGAGGuCCGC-------UGGUUU-UAC- -5'
13277 3' -56.1 NC_003409.1 + 47610 0.75 0.40604
Target:  5'- aGGGGGUGGUgCCagaugAGGUGACCAGGAUa -3'
miRNA:   3'- -CCCCCGUCGaGG-----UCCGCUGGUUUUAc -5'
13277 3' -56.1 NC_003409.1 + 42714 0.67 0.808127
Target:  5'- aGGGGGCccucgAGCgcugCCauggAGGCGACCuuGGa- -3'
miRNA:   3'- -CCCCCG-----UCGa---GG----UCCGCUGGuuUUac -5'
13277 3' -56.1 NC_003409.1 + 131221 0.68 0.780698
Target:  5'- cGGGGCAcuGCUcCCAGGCaGcACCAAc--- -3'
miRNA:   3'- cCCCCGU--CGA-GGUCCG-C-UGGUUuuac -5'
13277 3' -56.1 NC_003409.1 + 103638 0.68 0.780698
Target:  5'- aGGGGGCGGCUggcgggUCGGGUGuCCu----- -3'
miRNA:   3'- -CCCCCGUCGA------GGUCCGCuGGuuuuac -5'
13277 3' -56.1 NC_003409.1 + 43990 0.66 0.88778
Target:  5'- aGGGGCguagaauccccGGCcaUCCAGuCGACCGAGAc- -3'
miRNA:   3'- cCCCCG-----------UCG--AGGUCcGCUGGUUUUac -5'
13277 3' -56.1 NC_003409.1 + 123791 0.66 0.88778
Target:  5'- aGGGGGUgacuAGCUucCCAGGCuaggcgGGCCAu---- -3'
miRNA:   3'- -CCCCCG----UCGA--GGUCCG------CUGGUuuuac -5'
13277 3' -56.1 NC_003409.1 + 73930 0.68 0.799135
Target:  5'- -cGGGCgaagAGCuUCCGGGCGgucaugacggagACCAAGGUGu -3'
miRNA:   3'- ccCCCG----UCG-AGGUCCGC------------UGGUUUUAC- -5'
13277 3' -56.1 NC_003409.1 + 19651 0.69 0.742263
Target:  5'- -aGGGCAcGCgUCCAGGCaACCGGGGUc -3'
miRNA:   3'- ccCCCGU-CG-AGGUCCGcUGGUUUUAc -5'
13277 3' -56.1 NC_003409.1 + 84023 0.7 0.68185
Target:  5'- uGGGGCAGCaagAGGgGGCCGGAGUc -3'
miRNA:   3'- cCCCCGUCGaggUCCgCUGGUUUUAc -5'
13277 3' -56.1 NC_003409.1 + 56145 0.69 0.712371
Target:  5'- uGGGGGCAGUgcacgcaCCAGGau-CCAGAcUGg -3'
miRNA:   3'- -CCCCCGUCGa------GGUCCgcuGGUUUuAC- -5'
13277 3' -56.1 NC_003409.1 + 3022 0.66 0.858364
Target:  5'- aGGGGGCGGCguuUCCAuaugaGGCCAAGu-- -3'
miRNA:   3'- -CCCCCGUCG---AGGUccg--CUGGUUUuac -5'
13277 3' -56.1 NC_003409.1 + 115364 0.7 0.640608
Target:  5'- cGGGGCAuGCUCaCAGGC-ACCAu---- -3'
miRNA:   3'- cCCCCGU-CGAG-GUCCGcUGGUuuuac -5'
13277 3' -56.1 NC_003409.1 + 22610 0.71 0.588959
Target:  5'- uGGGGCuGCUCUucuGGGUGGCCGuGAUu -3'
miRNA:   3'- cCCCCGuCGAGG---UCCGCUGGUuUUAc -5'
13277 3' -56.1 NC_003409.1 + 128612 0.7 0.650951
Target:  5'- aGGGuGCGGC-CCAGGUGACauuggGGGGUGg -3'
miRNA:   3'- cCCC-CGUCGaGGUCCGCUGg----UUUUAC- -5'
13277 3' -56.1 NC_003409.1 + 84580 0.7 0.68185
Target:  5'- cGGGGCAGUgcuugCCAGGCGAg------- -3'
miRNA:   3'- cCCCCGUCGa----GGUCCGCUgguuuuac -5'
13277 3' -56.1 NC_003409.1 + 24738 0.68 0.75107
Target:  5'- aGGGGGCgcgccggGGCUCCugGGGUGcuGCCGGGGc- -3'
miRNA:   3'- -CCCCCG-------UCGAGG--UCCGC--UGGUUUUac -5'
13277 3' -56.1 NC_003409.1 + 54401 0.66 0.88076
Target:  5'- --uGGUcgAGUaCCAGGCGGCCAGAAa- -3'
miRNA:   3'- cccCCG--UCGaGGUCCGCUGGUUUUac -5'
13277 3' -56.1 NC_003409.1 + 90391 0.67 0.808127
Target:  5'- uGGGGCA-CUCgAGGC--CCAGAAUGu -3'
miRNA:   3'- cCCCCGUcGAGgUCCGcuGGUUUUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.