Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13277 | 5' | -57.4 | NC_003409.1 | + | 19105 | 1.12 | 0.001082 |
Target: 5'- gGGCAGCUCCAGGCGACCAAGAUGGCCc -3' miRNA: 3'- -CCGUCGAGGUCCGCUGGUUCUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 19138 | 1.02 | 0.006042 |
Target: 5'- gGGCAGCUCCAGGCGACCAAaAUGGCCc -3' miRNA: 3'- -CCGUCGAGGUCCGCUGGUUcUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 10374 | 0.76 | 0.302049 |
Target: 5'- uGGCGGauaCAGGuCGACCGuAGAUGGCUg -3' miRNA: 3'- -CCGUCgagGUCC-GCUGGU-UCUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 73931 | 0.75 | 0.323523 |
Target: 5'- gGGCgaagAGCuUCCGGGCggucaugacggaGACCAAGGUGuGCCg -3' miRNA: 3'- -CCG----UCG-AGGUCCG------------CUGGUUCUAC-CGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 22582 | 0.75 | 0.330929 |
Target: 5'- --aAGC-CCAGGCGACCAGGGgucGCCg -3' miRNA: 3'- ccgUCGaGGUCCGCUGGUUCUac-CGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 131706 | 0.75 | 0.353892 |
Target: 5'- aGguGCUgCGGGCGGCCAGGGacuaccgcugcgUGGCa -3' miRNA: 3'- cCguCGAgGUCCGCUGGUUCU------------ACCGg -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 80673 | 0.74 | 0.377137 |
Target: 5'- uGGgAGCaaagugugauauuUCCAGGCGACCAGGAcUGGg- -3' miRNA: 3'- -CCgUCG-------------AGGUCCGCUGGUUCU-ACCgg -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 107973 | 0.74 | 0.411709 |
Target: 5'- aGGgAGCUCCagGGGCGugcCCAccGUGGCCu -3' miRNA: 3'- -CCgUCGAGG--UCCGCu--GGUucUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 45901 | 0.74 | 0.411709 |
Target: 5'- uGGC-GCUaauGGCGcCCGGGGUGGCCu -3' miRNA: 3'- -CCGuCGAgguCCGCuGGUUCUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 33488 | 0.72 | 0.503614 |
Target: 5'- uGGCGcuGCUCCAGGCGAgaacagcccuCCGccuggcaacagaAGAgGGCCu -3' miRNA: 3'- -CCGU--CGAGGUCCGCU----------GGU------------UCUaCCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 128608 | 0.72 | 0.51331 |
Target: 5'- uGCGGC-CCAGGUGACauuggGGGGUGGgCg -3' miRNA: 3'- cCGUCGaGGUCCGCUGg----UUCUACCgG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 6394 | 0.71 | 0.542834 |
Target: 5'- aGGCGGgggugCCAuGGaCGGCCGAGGgugUGGCCu -3' miRNA: 3'- -CCGUCga---GGU-CC-GCUGGUUCU---ACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 68832 | 0.71 | 0.551803 |
Target: 5'- uGGCcuCUCUuGGUGGCCGAcacucgcGAUGGCCu -3' miRNA: 3'- -CCGucGAGGuCCGCUGGUU-------CUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 19652 | 0.71 | 0.552802 |
Target: 5'- gGGCAcGCgUCCAGGCaACCGGGGucccccucguUGGUCu -3' miRNA: 3'- -CCGU-CG-AGGUCCGcUGGUUCU----------ACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 22608 | 0.71 | 0.572895 |
Target: 5'- gGGCuGCUCUucuGGGUGGCCGuGAUugagcuaugugcGGCCa -3' miRNA: 3'- -CCGuCGAGG---UCCGCUGGUuCUA------------CCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 56073 | 0.7 | 0.619655 |
Target: 5'- uGGCAGCUgaaucagcauauaCAGGUGuCCAAGAcuaaaaaGGCCa -3' miRNA: 3'- -CCGUCGAg------------GUCCGCuGGUUCUa------CCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 13545 | 0.7 | 0.633958 |
Target: 5'- cGGC-GUUgCAGGUaACCuuGAUGGCCa -3' miRNA: 3'- -CCGuCGAgGUCCGcUGGuuCUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 119959 | 0.69 | 0.644175 |
Target: 5'- cGCGGCgcccacgCCGGcgccuggcacGCGGCCAacauaaaguguGGAUGGCCc -3' miRNA: 3'- cCGUCGa------GGUC----------CGCUGGU-----------UCUACCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 35249 | 0.69 | 0.654381 |
Target: 5'- cGGCGGU---AGGUGGCCAGGugGGCCc -3' miRNA: 3'- -CCGUCGaggUCCGCUGGUUCuaCCGG- -5' |
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13277 | 5' | -57.4 | NC_003409.1 | + | 52584 | 0.69 | 0.664571 |
Target: 5'- aGCAGg-CguGGCGGCCAAGG-GGCg -3' miRNA: 3'- cCGUCgaGguCCGCUGGUUCUaCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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