miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 4407 0.67 0.782263
Target:  5'- aGGCAGCUuugccacucuggUCAGGUaGAgCAcAGAguUGGCCg -3'
miRNA:   3'- -CCGUCGA------------GGUCCG-CUgGU-UCU--ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 6394 0.71 0.542834
Target:  5'- aGGCGGgggugCCAuGGaCGGCCGAGGgugUGGCCu -3'
miRNA:   3'- -CCGUCga---GGU-CC-GCUGGUUCU---ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 7655 0.66 0.843024
Target:  5'- aGCAGUcucugucuccgUCgCAGGUGGcauCCGAG-UGGCCa -3'
miRNA:   3'- cCGUCG-----------AG-GUCCGCU---GGUUCuACCGG- -5'
13277 5' -57.4 NC_003409.1 + 8881 0.66 0.817976
Target:  5'- aGCAGaccaaCAGGaUGAcaguccCCAGGGUGGCCa -3'
miRNA:   3'- cCGUCgag--GUCC-GCU------GGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 10374 0.76 0.302049
Target:  5'- uGGCGGauaCAGGuCGACCGuAGAUGGCUg -3'
miRNA:   3'- -CCGUCgagGUCC-GCUGGU-UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 13545 0.7 0.633958
Target:  5'- cGGC-GUUgCAGGUaACCuuGAUGGCCa -3'
miRNA:   3'- -CCGuCGAgGUCCGcUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 13690 0.67 0.75404
Target:  5'- cGCAGgagacccgCUAGGCGuuCCGgcgAGAUGGCCu -3'
miRNA:   3'- cCGUCga------GGUCCGCu-GGU---UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 19105 1.12 0.001082
Target:  5'- gGGCAGCUCCAGGCGACCAAGAUGGCCc -3'
miRNA:   3'- -CCGUCGAGGUCCGCUGGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 19138 1.02 0.006042
Target:  5'- gGGCAGCUCCAGGCGACCAAaAUGGCCc -3'
miRNA:   3'- -CCGUCGAGGUCCGCUGGUUcUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 19652 0.71 0.552802
Target:  5'- gGGCAcGCgUCCAGGCaACCGGGGucccccucguUGGUCu -3'
miRNA:   3'- -CCGU-CG-AGGUCCGcUGGUUCU----------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 20813 0.67 0.762619
Target:  5'- --uGGCUCCAGGgaguuccUGGCCGGGcgcGGCCu -3'
miRNA:   3'- ccgUCGAGGUCC-------GCUGGUUCua-CCGG- -5'
13277 5' -57.4 NC_003409.1 + 22582 0.75 0.330929
Target:  5'- --aAGC-CCAGGCGACCAGGGgucGCCg -3'
miRNA:   3'- ccgUCGaGGUCCGCUGGUUCUac-CGG- -5'
13277 5' -57.4 NC_003409.1 + 22608 0.71 0.572895
Target:  5'- gGGCuGCUCUucuGGGUGGCCGuGAUugagcuaugugcGGCCa -3'
miRNA:   3'- -CCGuCGAGG---UCCGCUGGUuCUA------------CCGG- -5'
13277 5' -57.4 NC_003409.1 + 22987 0.67 0.791415
Target:  5'- uGCGGUcCCagaaaAGGUcGCCGAGGUGGCa -3'
miRNA:   3'- cCGUCGaGG-----UCCGcUGGUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 24018 0.66 0.826504
Target:  5'- gGGUGGUUUCGguagauGGgGGCCGGGAggauggGGCCc -3'
miRNA:   3'- -CCGUCGAGGU------CCgCUGGUUCUa-----CCGG- -5'
13277 5' -57.4 NC_003409.1 + 28787 0.68 0.724851
Target:  5'- gGGCAGUcCCAGuGCuaaacuGACuCAAGcUGGCCc -3'
miRNA:   3'- -CCGUCGaGGUC-CG------CUG-GUUCuACCGG- -5'
13277 5' -57.4 NC_003409.1 + 32156 0.66 0.843024
Target:  5'- -cCAGCUCUAggaaggcuGGCGACgu-GAUGGCUc -3'
miRNA:   3'- ccGUCGAGGU--------CCGCUGguuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 33488 0.72 0.503614
Target:  5'- uGGCGcuGCUCCAGGCGAgaacagcccuCCGccuggcaacagaAGAgGGCCu -3'
miRNA:   3'- -CCGU--CGAGGUCCGCU----------GGU------------UCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 33925 0.67 0.800423
Target:  5'- aGCGGCUCCcuuauugagAGGCG-CCAGcGA-GGCg -3'
miRNA:   3'- cCGUCGAGG---------UCCGCuGGUU-CUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 35249 0.69 0.654381
Target:  5'- cGGCGGU---AGGUGGCCAGGugGGCCc -3'
miRNA:   3'- -CCGUCGaggUCCGCUGGUUCuaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.