miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 73931 0.75 0.323523
Target:  5'- gGGCgaagAGCuUCCGGGCggucaugacggaGACCAAGGUGuGCCg -3'
miRNA:   3'- -CCG----UCG-AGGUCCG------------CUGGUUCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 133297 0.67 0.772978
Target:  5'- aGCAGaCUgCCAgGGCGuuGCCAGGAguggUGGCg -3'
miRNA:   3'- cCGUC-GA-GGU-CCGC--UGGUUCU----ACCGg -5'
13277 5' -57.4 NC_003409.1 + 95585 0.67 0.791415
Target:  5'- aGGCAGCgUCCucagAGGCGuccuCCAGc--GGCCc -3'
miRNA:   3'- -CCGUCG-AGG----UCCGCu---GGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 133126 0.66 0.851001
Target:  5'- -cCAGCUUCAGG-GucuCCAAGAUGcGCa -3'
miRNA:   3'- ccGUCGAGGUCCgCu--GGUUCUAC-CGg -5'
13277 5' -57.4 NC_003409.1 + 19652 0.71 0.552802
Target:  5'- gGGCAcGCgUCCAGGCaACCGGGGucccccucguUGGUCu -3'
miRNA:   3'- -CCGU-CG-AGGUCCGcUGGUUCU----------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 56073 0.7 0.619655
Target:  5'- uGGCAGCUgaaucagcauauaCAGGUGuCCAAGAcuaaaaaGGCCa -3'
miRNA:   3'- -CCGUCGAg------------GUCCGCuGGUUCUa------CCGG- -5'
13277 5' -57.4 NC_003409.1 + 78379 0.68 0.694947
Target:  5'- aGCuAGCUCCuGGCGuccguuuCCGGGA-GGCUc -3'
miRNA:   3'- cCG-UCGAGGuCCGCu------GGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 87793 0.68 0.694947
Target:  5'- cGCAGguaUCCAcGGgGACguAGAUGGCa -3'
miRNA:   3'- cCGUCg--AGGU-CCgCUGguUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 123432 0.68 0.744405
Target:  5'- uGGCAGUUgCCAuauagaguGGCGAgCGuauGUGGCCu -3'
miRNA:   3'- -CCGUCGA-GGU--------CCGCUgGUuc-UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 40977 0.67 0.763567
Target:  5'- gGGCgccAGCUCguGGCGAaucuguuccaCAAGA-GGCUg -3'
miRNA:   3'- -CCG---UCGAGguCCGCUg---------GUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 61867 0.67 0.75404
Target:  5'- aGGCAG-UCCAGGuCGACagcggggacggGGGGUGaGCCu -3'
miRNA:   3'- -CCGUCgAGGUCC-GCUGg----------UUCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 119789 0.68 0.714951
Target:  5'- uGGCcGCgugCCAGGCG-CCGGcGUGGgCg -3'
miRNA:   3'- -CCGuCGa--GGUCCGCuGGUUcUACCgG- -5'
13277 5' -57.4 NC_003409.1 + 22582 0.75 0.330929
Target:  5'- --aAGC-CCAGGCGACCAGGGgucGCCg -3'
miRNA:   3'- ccgUCGaGGUCCGCUGGUUCUac-CGG- -5'
13277 5' -57.4 NC_003409.1 + 131223 0.67 0.75404
Target:  5'- gGGCAcuGCUcCCAGGCaGcACCAAcgcGGCCa -3'
miRNA:   3'- -CCGU--CGA-GGUCCG-C-UGGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 80673 0.74 0.377137
Target:  5'- uGGgAGCaaagugugauauuUCCAGGCGACCAGGAcUGGg- -3'
miRNA:   3'- -CCgUCG-------------AGGUCCGCUGGUUCU-ACCgg -5'
13277 5' -57.4 NC_003409.1 + 54204 0.68 0.708976
Target:  5'- cGGUAGacagagCAGGCGugCAGGGagucguguguuuuucUGGCCg -3'
miRNA:   3'- -CCGUCgag---GUCCGCugGUUCU---------------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 71389 0.67 0.756909
Target:  5'- aGGCAGCUaCC-GGCGAcucauuaagccccgcCCAgaaaccaguagcuGGGUGGCa -3'
miRNA:   3'- -CCGUCGA-GGuCCGCU---------------GGU-------------UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 112441 0.67 0.772978
Target:  5'- gGGCAGCcucgcagUCGGGCGucCCAAGGcaaGGCa -3'
miRNA:   3'- -CCGUCGa------GGUCCGCu-GGUUCUa--CCGg -5'
13277 5' -57.4 NC_003409.1 + 6394 0.71 0.542834
Target:  5'- aGGCGGgggugCCAuGGaCGGCCGAGGgugUGGCCu -3'
miRNA:   3'- -CCGUCga---GGU-CC-GCUGGUUCU---ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 35249 0.69 0.654381
Target:  5'- cGGCGGU---AGGUGGCCAGGugGGCCc -3'
miRNA:   3'- -CCGUCGaggUCCGCUGGUUCuaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.