miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 33925 0.67 0.800423
Target:  5'- aGCGGCUCCcuuauugagAGGCG-CCAGcGA-GGCg -3'
miRNA:   3'- cCGUCGAGG---------UCCGCuGGUU-CUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 108603 0.67 0.800423
Target:  5'- aGGcCGGcCUCCuguuGGCcACCAuagacacGGUGGCCg -3'
miRNA:   3'- -CC-GUC-GAGGu---CCGcUGGUu------CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 42192 0.67 0.800423
Target:  5'- aGCAGCUUCA--UGGCCAcguggGGGUGGCa -3'
miRNA:   3'- cCGUCGAGGUccGCUGGU-----UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 105039 0.67 0.791415
Target:  5'- gGGCugguGCUCgucuGGUGGCU--GGUGGCCa -3'
miRNA:   3'- -CCGu---CGAGgu--CCGCUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 22987 0.67 0.791415
Target:  5'- uGCGGUcCCagaaaAGGUcGCCGAGGUGGCa -3'
miRNA:   3'- cCGUCGaGG-----UCCGcUGGUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 95585 0.67 0.791415
Target:  5'- aGGCAGCgUCCucagAGGCGuccuCCAGc--GGCCc -3'
miRNA:   3'- -CCGUCG-AGG----UCCGCu---GGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 51561 0.67 0.782263
Target:  5'- aGGCAGCaCCAcGUgGGCCAAacGGUGGCa -3'
miRNA:   3'- -CCGUCGaGGUcCG-CUGGUU--CUACCGg -5'
13277 5' -57.4 NC_003409.1 + 113969 0.67 0.782263
Target:  5'- uGGCAGCcCCcguGGCGGauucggccgcaCAGGGUGGUg -3'
miRNA:   3'- -CCGUCGaGGu--CCGCUg----------GUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 4407 0.67 0.782263
Target:  5'- aGGCAGCUuugccacucuggUCAGGUaGAgCAcAGAguUGGCCg -3'
miRNA:   3'- -CCGUCGA------------GGUCCG-CUgGU-UCU--ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 128822 0.67 0.776708
Target:  5'- cGGCaagAGUUCCcuGGGCcgcgggaaggucaugGGCCAAGG-GGCCu -3'
miRNA:   3'- -CCG---UCGAGG--UCCG---------------CUGGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 133297 0.67 0.772978
Target:  5'- aGCAGaCUgCCAgGGCGuuGCCAGGAguggUGGCg -3'
miRNA:   3'- cCGUC-GA-GGU-CCGC--UGGUUCU----ACCGg -5'
13277 5' -57.4 NC_003409.1 + 112441 0.67 0.772978
Target:  5'- gGGCAGCcucgcagUCGGGCGucCCAAGGcaaGGCa -3'
miRNA:   3'- -CCGUCGa------GGUCCGCu-GGUUCUa--CCGg -5'
13277 5' -57.4 NC_003409.1 + 115113 0.67 0.763567
Target:  5'- cGGguGCUCCGGGag--CAGGGaGGCUg -3'
miRNA:   3'- -CCguCGAGGUCCgcugGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 40977 0.67 0.763567
Target:  5'- gGGCgccAGCUCguGGCGAaucuguuccaCAAGA-GGCUg -3'
miRNA:   3'- -CCG---UCGAGguCCGCUg---------GUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 20813 0.67 0.762619
Target:  5'- --uGGCUCCAGGgaguuccUGGCCGGGcgcGGCCu -3'
miRNA:   3'- ccgUCGAGGUCC-------GCUGGUUCua-CCGG- -5'
13277 5' -57.4 NC_003409.1 + 71389 0.67 0.756909
Target:  5'- aGGCAGCUaCC-GGCGAcucauuaagccccgcCCAgaaaccaguagcuGGGUGGCa -3'
miRNA:   3'- -CCGUCGA-GGuCCGCU---------------GGU-------------UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 61867 0.67 0.75404
Target:  5'- aGGCAG-UCCAGGuCGACagcggggacggGGGGUGaGCCu -3'
miRNA:   3'- -CCGUCgAGGUCC-GCUGg----------UUCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 13690 0.67 0.75404
Target:  5'- cGCAGgagacccgCUAGGCGuuCCGgcgAGAUGGCCu -3'
miRNA:   3'- cCGUCga------GGUCCGCu-GGU---UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 131223 0.67 0.75404
Target:  5'- gGGCAcuGCUcCCAGGCaGcACCAAcgcGGCCa -3'
miRNA:   3'- -CCGU--CGA-GGUCCG-C-UGGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 49096 0.67 0.753081
Target:  5'- uGGCGGCUCgAcuguGGCGcGCCAccccacuAGGcagGGCCa -3'
miRNA:   3'- -CCGUCGAGgU----CCGC-UGGU-------UCUa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.